Influence of Solvent Representation on Nuclear Shielding Calculations of Protonation States of Small Biological Molecules

被引:12
|
作者
Roggatz, Christina C. [1 ]
Lorch, Mark [1 ]
Benoit, David M. [1 ,2 ,3 ]
机构
[1] Univ Hull, Chem Sch Math & Phys Sci, Cottingham Rd, Kingston Upon Hull HU6 7RX, N Humberside, England
[2] Univ Hull, EA Milne Ctr Astrophys, Cottingham Rd, Kingston Upon Hull HU6 7RX, N Humberside, England
[3] Univ Hull, GW Gray Ctr Adv Mat, Cottingham Rd, Kingston Upon Hull HU6 7RX, N Humberside, England
关键词
NMR CHEMICAL-SHIFTS; CONSISTENT BASIS-SETS; DENSITY-FUNCTIONAL METHODS; HARTREE-FOCK; AMINO-ACIDS; GLYCINE; MODEL; C-13; H-1; PREDICTION;
D O I
10.1021/acs.jctc.7b01020
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this study, we assess the influence of solvation on the accuracy and reliability of isotropic nuclear magnetic shielding calculations for amino acids in comparison to experimental data. We focus particularly on the performance of solvation methods for different protonation states, as biological molecules occur almost exclusively in aqueous solution and are subject to protonation with pH. We identify significant shortcomings of current implicit solvent models and present a hybrid solvation approach that improves agreement with experimental data by taking into account the presence of direct interactions between amino acid protonation state and water molecules.
引用
收藏
页码:2684 / 2695
页数:12
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