Transcriptomic analyses of RNA-binding proteins reveal eIF3c promotes cell proliferation in hepatocellular carcinoma

被引:34
|
作者
Li, Tangjian [1 ,2 ]
Li, Shengli [1 ,2 ]
Chen, Di [1 ,2 ]
Chen, Bing [1 ,2 ]
Yu, Tao [3 ]
Zhao, Fangyu [3 ]
Wang, Qifeng [1 ,2 ]
Yao, Ming [3 ]
Huang, Shenglin [1 ,2 ]
Chen, Zhiao [1 ,2 ]
He, Xianghuo [1 ,2 ]
机构
[1] Fudan Univ, Shanghai Canc Ctr, Rm 1207,2 Bldg,270 Dong An Rd, Shanghai 200032, Peoples R China
[2] Fudan Univ, Shanghai Med Coll, Inst Biomed Sci, Shanghai, Peoples R China
[3] Shanghai Jiao Tong Univ, Renji Hosp, State Key Lab Oncogenes & Related Genes, Shanghai Canc Inst,Sch Med, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
Cell proliferation; eukaryotic translation initiation factor 3 subunit C; hepatocellular carcinoma; RNA binding-proteins; the Cancer Genome Atlas; MESENCHYMAL TRANSITION; MESSENGER-RNA; GENE; METASTASIS; EZH2;
D O I
10.1111/cas.13209
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
RNA-binding proteins (RBPs) play fundamental roles in the RNA life cycle. The aberrant expression of RBPs is often observed in human disease, including cancer. In this study, we screened for the expression levels of 1542 human RBPs in The Cancer Genome Atlas liver hepatocellular carcinoma samples and found 92 consistently upregulated RBP genes in HCC compared with normal samples. Additionally, we undertook a Kaplan-Meier analysis and found that high expression of 15 RBP genes was associated with poor prognosis in patients with HCC. Furthermore, we found that eIF3c promotes HCC cell proliferation in vitro as well as tumorigenicity in vivo. Gene Set Enrichment Analysis showed that high eIF3c expression is positively associated with KRAS, vascular endothelial growth factor, and Hedgehog signaling pathways, all of which are closely associated with specific cancer-related gene sets. Our study provides the basis for further investigation of the molecular mechanism by which eIF3c promotes the development and progression of HCC.
引用
收藏
页码:877 / 885
页数:9
相关论文
共 50 条
  • [31] Long non-coding RNA RP11-284P20.2 promotes cell proliferation and invasion in hepatocellular carcinoma by recruiting EIF3b to induce c-met protein synthesis
    Fang, Qin-Liang
    Zhou, Jian-Yin
    Xiong, Yu
    Xie, Cheng-Rong
    Wang, Fu-Qiang
    Li, Yun-Tong
    Yin, Zhen-Yu
    Luo, Guo-Hui
    BIOSCIENCE REPORTS, 2020, 40
  • [32] Hyper conserved elements in vertebrate mRNA 3′-UTRs reveal a translational network of RNA-binding proteins controlled by HuR
    Dassi, Erik
    Zuccotti, Paola
    Leo, Sara
    Provenzani, Alessandro
    Assfalg, Michael
    D'Onofrio, Mariapina
    Riva, Paola
    Quattrone, Alessandro
    NUCLEIC ACIDS RESEARCH, 2013, 41 (05) : 3201 - 3216
  • [33] RNA-binding motif protein 28 enhances angiogenesis by improving STAT3 translation in hepatocellular carcinoma
    Han, Hexu
    Yuan, Yin
    Li, Caiying
    Liu, Lei
    Yu, Hong
    Han, Gaohua
    Wang, Qiang
    Lin, Mei
    Huang, Junxing
    CANCER LETTERS, 2024, 604
  • [34] Transcriptomic Analyses Reveal Long Non-Coding RNA in Peripheral Blood Mononuclear Cells as a Novel Biomarker for Diagnosis and Prognosis of Hepatocellular Carcinoma
    Kunadirek, Pattapon
    Pinjaroen, Nutcha
    Nookaew, Intawat
    Tangkijvanich, Pisit
    Chuaypen, Natthaya
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (14)
  • [35] RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation
    Palanichamy, Jayanth Kumar
    Tran, Tiffany M.
    Howard, Jonathan M.
    Contreras, Jorge R.
    Fernando, Thilini R.
    Sterne-Weiler, Timothy
    Katzman, Sol
    Toloue, Masoud
    Yan, Weihong
    Basso, Giuseppe
    Pigazzi, Martina
    Sanford, Jeremy R.
    Rao, Dinesh S.
    JOURNAL OF CLINICAL INVESTIGATION, 2016, 126 (04): : 1495 - 1511
  • [36] The circular RNA circ_GRHPR promotes NSCLC cell proliferation and invasion via interactions with the RNA-binding protein PCBP2
    Hou, Yanyan
    Lin, Jiafei
    Wang, Danyang
    Zhang, Yingwei
    Liang, Qiuli
    Chen, Ning
    Wu, Jiemin
    Wu, Weiqi
    Liu, Xiangfan
    Ni, Peihua
    CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY, 2021, 48 (08) : 1171 - 1181
  • [37] The Prognostic Signature of Head and Neck Squamous Cell Carcinoma Constructed by Immune-Related RNA-Binding Proteins
    Ming, Ruijie
    Li, Xiangrui
    Wang, Enhao
    Wei, Jiahui
    Liu, Bo
    Zhou, Peng
    Yu, Wenting
    Zong, Shimin
    Xiao, Hongjun
    FRONTIERS IN ONCOLOGY, 2022, 12
  • [38] Circular RNA hsa_circ_0002124 promotes hepatocellular carcinoma cell proliferation through the MAPK pathway
    Fang, Zhigang
    Fan, Ruifang
    Lu, Ying
    Sun, Yanling
    Zhao, Caihan
    Liu, Lingling
    Liu, Xiangfu
    TRANSLATIONAL CANCER RESEARCH, 2019, 8 (02) : 367 - 378
  • [39] Zinc finger transcription factor 191, directly binding to β-catenin promoter, promotes cell proliferation of hepatocellular carcinoma
    Liu, Guoyuan
    Jiang, Songmin
    Wang, Chenji
    Jiang, Wei
    Liu, Zulong
    Liu, Chao
    Saiyin, Hexige
    Yang, Xianmei
    Shen, Suqin
    Jiang, Deke
    Zhou, Ping
    Han, Dingding
    Hu, Xiaohui
    Yi, Qing
    Yu, Long
    HEPATOLOGY, 2012, 55 (06) : 1830 - 1839
  • [40] The eIF3c/NIP1 PCI domain interacts with RNA and RACK1/ASC1 and promotes assembly of translation preinitiation complexes
    Kouba, Tomas
    Rutkai, Edit
    Karaskova, Martina
    Valasek, Leos Shivaya
    NUCLEIC ACIDS RESEARCH, 2012, 40 (06) : 2683 - 2699