DEVELOPMENT OF A NOVEL SET OF EST-SSR MARKERS AND CROSS-SPECIES AMPLIFICATION IN TAMARIX AFRICANA (TAMARICACEAE)

被引:9
|
作者
Terzoli, Serena [1 ]
Beritognolo, Isacco [1 ]
Sabatti, Maurizio [1 ]
Kuzminsky, Elena [1 ]
机构
[1] Univ Tuscia, Dept Forest Environm & Resources, I-01100 Viterbo, Italy
关键词
expressed sequence tags; microsatellites; Tamarix; taxonomy;
D O I
10.3732/ajb.1000112
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Premise of the study: Tamarix plants are resistant to abiotic stresses and have become invasive in North America. Their taxonomy is troublesome, and few molecular makers are available to enable species identification or to track the spread of specific invasive genotypes. Transcriptome sequencing projects offer a potential source for the development of new markers. Methods and Results: Thirteen polymorphic simple sequence repeats (SSRs) markers derived from Expressed Sequence Tags (ESTs) from Tamarix hispida, T. androssowii, T. ramosissima, and T. albiflonum were identified and screened on 24 samples of T. africana to detect polymorphism. The number of alleles per locus ranged from two to eight, with an average of 4.3 alleles per locus, and the mean expected heterozygosity was 0.453. Conclusions: Amplification products of these 13 loci were also generated for T. gallica. These new EST-SSR markers will be useful in genetic characterization of Tamarix, as additional tools for taxonomic clarification, and for studying invasive populations where they are a threat.
引用
收藏
页码:E45 / E47
页数:3
相关论文
共 50 条
  • [41] Development and characterization of genomic SSR markers for Tamarix chinensis (Tamaricaceae)
    Zhang, Ruhua
    Wen, Qiang
    Ku, Li-an
    APPLICATIONS IN PLANT SCIENCES, 2019, 7 (02):
  • [42] Development and characterization of EST-SSR markers in Asarum sakawanum var. stellatum and cross-amplification in related species
    Takahashi, Daiki
    Sakaguchi, Shota
    Setoguchi, Hiroaki
    PLANT SPECIES BIOLOGY, 2017, 32 (03) : 256 - 260
  • [43] DEVELOPMENT OF EST-SSR MARKERS IN PISTACHIO
    Akash, Muhanad W.
    Ateyyeh, Ahmad
    Saleh, Mohammed
    FRESENIUS ENVIRONMENTAL BULLETIN, 2020, 29 (10): : 9303 - 9310
  • [44] Development and characterization of EST-SSR markers in creeping mazus (Mazus miquelii), and cross-amplification in five related species
    Yamamoto, Masaya
    Takahashi, Daiki
    Yu, Chih-Chieh
    Setoguchi, Hiroaki
    TAIWANIA, 2020, 65 (02) : 249 - 252
  • [45] Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing
    Qiang Zhou
    Dong Luo
    Lichao Ma
    Wengang Xie
    Yu Wang
    Yanrong Wang
    Zhipeng Liu
    Scientific Reports, 6
  • [46] Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing
    Zhou, Qiang
    Luo, Dong
    Ma, Lichao
    Xie, Wengang
    Wang, Yu
    Wang, Yanrong
    Liu, Zhipeng
    SCIENTIFIC REPORTS, 2016, 6
  • [47] Development of novel EST-SSR markers for cucumber (Cucumis sativus) and their transferability to related species
    Hu, Jian-bin
    Zhou, Xiu-yan
    Li, Jian-wu
    SCIENTIA HORTICULTURAE, 2010, 125 (03) : 534 - 538
  • [48] A novel set of 223 EST-SSR markers in Casuarina L. ex Adans.: polymorphisms, cross-species transferability, and utility for commercial clone genotyping
    Xiuyu Xu
    Changpin Zhou
    Yong Zhang
    Weiqiang Zhang
    Xianhua Gan
    Huaxin Zhang
    Yong Guo
    Siming Gan
    Tree Genetics & Genomes, 2018, 14
  • [49] A novel set of 223 EST-SSR markers in Casuarina L. ex Adans.: polymorphisms, cross-species transferability, and utility for commercial clone genotyping
    Xu, Xiuyu
    Zhou, Changpin
    Zhang, Yong
    Zhang, Weiqiang
    Gan, Xianhua
    Zhang, Huaxin
    Guo, Yong
    Gan, Siming
    TREE GENETICS & GENOMES, 2018, 14 (02)
  • [50] Cross-species transferability of EST-SSR markers developed from the transcriptome of Melilotus and their application to population genetics research
    Zhuanzhuan Yan
    Fan Wu
    Kai Luo
    Yufeng Zhao
    Qi Yan
    Yufei Zhang
    Yanrong Wang
    Jiyu Zhang
    Scientific Reports, 7