First principles characterisation of bio-nano interface

被引:30
|
作者
Rouse, Ian [1 ]
Power, David [1 ]
Brandt, Erik G. [2 ]
Schneemilch, Matthew [3 ]
Kotsis, Konstantinos [1 ]
Quirke, Nick [3 ]
Lyubartsev, Alexander P. [2 ]
Lobaskin, Vladimir [1 ]
机构
[1] Univ Coll Dublin, Sch Phys, Dublin 4, Ireland
[2] Stockholm Univ, Dept Mat & Environm Chem, S-10691 Stockholm, Sweden
[3] Imperial Coll, Dept Chem, 301G Mol Sci Res Hub,White City Campus, London W12 OBZ, England
基金
爱尔兰科学基金会;
关键词
C-6; COEFFICIENTS; LIPID-BILAYERS; FORCE-FIELD; BINDING; PROTEINS; POLARIZABILITIES; CYTOTOXICITY; SIMULATIONS; RUTILE; INDEX;
D O I
10.1039/d1cp01116b
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Nanomaterials possess a wide range of potential applications due to their novel properties and exceptionally high activity as a result of their large surface to volume ratios compared to bulk matter. The active surface may present both advantage and risk when the nanomaterials interact with living organisms. As the overall biological impact of nanomaterials is triggered and mediated by interactions at the bio-nano interface, an ability to predict those from the atomistic descriptors, especially before the material is produced, can present enormous advantage for the development of nanotechnology. Fast screening of nanomaterials and their variations for specific biological effects can be enabled using computational materials modelling. The challenge lies in the range of scales that needs to be crossed from the material-specific atomistic representation to the relevant length scales covering typical biomolecules (proteins and lipids). In this work, we present a systematic multiscale approach that allows one to evaluate crucial interactions at the bionano interface from the first principles without any prior information about the material and thus establish links between the details of the nanomaterials structure to protein-nanoparticle interactions. As an example, an advanced computational characterization of titanium dioxide nanoparticles (6 different surfaces of rutile and anatase polymorphs) has been performed. We computed characteristics of the titanium dioxide interface with water using density functional theory for electronic density, used these parameters to derive an atomistic force field, and calculated adsorption energies for essential biomolecules on the surface of titania nanoparticles via direct atomistic simulations and coarse-grained molecular dynamics. Hydration energies, as well as adsorption energies for a set of 40 blood proteins are reported.
引用
收藏
页码:13473 / 13482
页数:10
相关论文
共 50 条
  • [21] Bio-Cyber Interface Parameter Estimation with Neural Network for the Internet of Bio-Nano Things
    Soha Mohamed
    Jian Dong
    Saied M. Abd El-Atty
    Mahmoud A. Eissa
    Wireless Personal Communications, 2022, 123 : 1245 - 1263
  • [22] Internet of Nano and Bio-Nano Things: A Review
    Senturk, Seyda
    Kok, Ibrahim
    Senturk, Fatmana
    SEMANTIC INTELLIGENCE, ISIC 2022, 2023, 964 : 265 - 276
  • [23] Interlayer Water Regulates the Bio-nano Interface of a β-sheet Protein stacking on Graphene
    Wenping Lv
    Guiju Xu
    Hongyan Zhang
    Xin Li
    Shengju Liu
    Huan Niu
    Dongsheng Xu
    Ren'an Wu
    Scientific Reports, 5
  • [24] Kinetics and Timescales in Bio-Nano Interactions
    Lima, Andre F.
    Sousa, Alioscka A.
    PHYSCHEM, 2023, 3 (04): : 385 - 410
  • [25] Interlayer Water Regulates the Bio-nano Interface of a β-sheet Protein stacking on Graphene
    Lv, Wenping
    Xu, Guiju
    Zhang, Hongyan
    Li, Xin
    Liu, Shengju
    Niu, Huan
    Xu, Dongsheng
    Wu, Ren'an
    SCIENTIFIC REPORTS, 2015, 5
  • [26] Optimizing the bio-nano interface via a multi-coordinating polymer coating
    Wang, Wentao
    Ji, Xin
    Kapur, Anshika
    Mattoussi, Hedi
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 252
  • [27] Probing the Intracellular Bio-Nano Interface in Different Cell Lines with Gold Nanostars
    Spedalieri, Cecilia
    Szekeres, Gergo Peter
    Werner, Stephan
    Guttmann, Peter
    Kneipp, Janina
    NANOMATERIALS, 2021, 11 (05)
  • [28] Characterization of bio-nano doped phase change material (bio-nano/PCM) for building energy management
    Selvasofia, S. D. Anitha
    Shri, S. Deepa
    Kumar, P. Manoj
    Prakash, K. B.
    ENERGY SOURCES PART A-RECOVERY UTILIZATION AND ENVIRONMENTAL EFFECTS, 2024, 46 (01) : 3760 - 3778
  • [29] Bio-nano interfaces for renewable energy
    Cha, Jennifer
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 255