A fully segmented 3D anatomical atlas of a lizard brain

被引:8
|
作者
Hoops, Daniel [1 ,2 ]
Weng, Hanyi [1 ]
Shahid, Ayesha [1 ]
Skorzewski, Philip [1 ]
Janke, Andrew L. [3 ]
Lerch, Jason P. [1 ,2 ,4 ]
Sled, John G. [1 ,2 ]
机构
[1] Hosp Sick Children, Mouse Imaging Ctr, Toronto, ON, Canada
[2] Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
[3] Univ Queensland, Ctr Adv Imaging, Brisbane, Qld, Australia
[4] Univ Oxford, FMRIB Nuffield Dept Clin Neurosci, Wellcome Ctr Integrat Neuroimaging, Oxford, England
来源
BRAIN STRUCTURE & FUNCTION | 2021年 / 226卷 / 06期
关键词
Reptile; Magnetic resonance imaging; Agamid; Evolutionary neuroscience; Segmentation; Registration; STEREOTAXIC ATLAS; FOREBRAIN ATLAS; MRI; DIENCEPHALON; EVOLUTION;
D O I
10.1007/s00429-021-02282-z
中图分类号
R602 [外科病理学、解剖学]; R32 [人体形态学];
学科分类号
100101 ;
摘要
As the relevance of lizards in evolutionary neuroscience increases, so does the need for more accurate anatomical references. Moreover, the use of magnetic resonance imaging (MRI) in evolutionary neuroscience is becoming more widespread; this represents a fundamental methodological shift that opens new avenues of investigative possibility but also poses new challenges. Here, we aim to facilitate this shift by providing a three-dimensional segmentation atlas of the tawny dragon brain. The tawny dragon (Ctenophorus decresii) is an Australian lizard of increasing importance as a model system in ecology and, as a member of the agamid lizards, in evolution. Based on a consensus average 3D image generated from the MRIs of 13 male tawny dragon heads, we identify and segment 224 structures visible across the entire lizard brain. We describe the relevance of this atlas to the field of evolutionary neuroscience and propose further experiments for which this atlas can provide the foundation. This advance in defining lizard neuroanatomy will facilitate numerous studies in evolutionary neuroscience. The atlas is available for download as a supplementary material to this manuscript and through the Open Science Framework (OSF; https://doi.org/10.17605/OSF.IO/UJENQ).
引用
收藏
页码:1727 / 1741
页数:15
相关论文
共 50 条
  • [31] A Framework for Representation and Visualization of 3D Shape Variability of Organs in an Interactive Anatomical Atlas
    Hacker, S.
    Handels, H.
    METHODS OF INFORMATION IN MEDICINE, 2009, 48 (03) : 272 - 281
  • [32] Interactive 3D atlas of the human hand: anatomical specimens, illustrations and CT scans
    Burchianti, Livia
    Barros, Mirna Duarte
    Curcio, Daniella Franco
    FASEB JOURNAL, 2016, 30
  • [33] Illustrations, CT scans and Pictures of Anatomical Dissections in a 3D Atlas of the Human Hand
    Burchianti, Livia
    Barros, Mirna
    Curcio, Daniella
    FASEB JOURNAL, 2015, 29
  • [34] A 3D transcriptomics atlas of the mouse nose sheds light into the anatomical logic of smell
    Segura, Mayra L. Ruiz Tejada
    Abou Moussa, Eman H.
    Garabello, Elisa
    Nakahara, Thiago S.
    Makhlouf, Melanie
    Valle, Filippo
    Huang, Susie S. Y.
    Mainland, Joel D.
    Caselle, Michele
    Osella, Matteo
    Lorenz, Stephan
    Reisert, Johannes
    Logan, Darren W.
    Malnic, Bettina
    Scialdone, Antonio
    Saraiva, Luis R.
    CHEMICAL SENSES, 2022, 47
  • [35] A 3D transcriptomics atlas of the mouse nose sheds light on the anatomical logic of smell
    Segura, Mayra L. Ruiz Tejada
    Abou Moussa, Eman
    Garabello, Elisa
    Nakahara, Thiago S.
    Makhlouf, Melanie
    Mathew, Lisa S.
    Wang, Li
    Valle, Filippo
    Huang, Susie S. Y.
    Mainland, Joel D.
    Caselle, Michele
    Osella, Matteo
    Lorenz, Stephan
    Reisert, Johannes
    Logan, Darren W.
    Malnic, Bettina
    Scialdone, Antonio
    Saraiva, Luis R.
    CELL REPORTS, 2022, 38 (12):
  • [36] A real-scale anatomical model of the dentate gyrus based on single cell reconstructions and 3D rendering of a brain atlas
    Scorcioni, R
    Bouteiller, JM
    Ascoli, GA
    NEUROCOMPUTING, 2002, 44 : 629 - 634
  • [37] Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration
    Heidi Kleven
    Ingvild E. Bjerke
    Francisco Clascá
    Henk J. Groenewegen
    Jan G. Bjaalie
    Trygve B. Leergaard
    Nature Methods, 2023, 20 : 1822 - 1829
  • [38] Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration
    Kleven, Heidi
    Bjerke, Ingvild E.
    Clasca, Francisco
    Groenewegen, Henk J.
    Bjaalie, Jan G.
    Leergaard, Trygve B.
    NATURE METHODS, 2023, 20 (11) : 1822 - 1829
  • [39] A 3D adult zebrafish brain atlas (AZBA) for the digital age
    Kenney, Justin W.
    Steadman, Patrick E.
    Young, Olivia
    Shi, Meng Ting
    Polanco, Maris
    Dubaishi, Saba
    Covert, Kristopher
    Mueller, Thomas
    Frankland, Paul W.
    ELIFE, 2021, 10
  • [40] Automatic registration of 3D MR images with a computerized brain atlas
    Cuisenaire, O
    Thiran, JP
    Macq, B
    Michel, C
    DeVolder, A
    Marques, F
    MEDICAL IMAGING 1996: IMAGE PROCESSING, 1996, 2710 : 438 - 448