Genetic diversity and population structure of muscovy duck (Cairina moschata) from Nigeria

被引：3
|
作者：
Adeola, Adeniyi C. [1 ,2 ,3 ]
Sola-Ojo, Foluke E. [4 ]
Opeyemi, Yusuf A. [4 ]
Oguntunji, Abel O. [5 ]
Nneji, Lotanna Micah [6 ]
Ewuola, Muslim K. [7 ]
Bello, Semiu F. [8 ]
Olaniyi, Wasiu A. [9 ]
Adesoji, Adeosun T. [10 ]
Karuno, Alex P. [1 ]
Sanke, Oscar J. [11 ]
Daniel, Ebiakpo Lucky [12 ]
机构：
[1] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Mol Evolut & Genome Divers, Kunming, Yunnan, Peoples R China
[2] Chinese Acad Sci, Sino Africa Joint Res Ctr, Kunming, Yunnan, Peoples R China
[3] Bayero Univ, Ctr Biotechnol Res, Kano, Nigeria
[4] Univ Ilorin, Fac Agr, Dept Anim Prod, Ilorin, Kwara, Nigeria
[5] Bowen Univ, Dept Anim Sci & Fisheries Management, Iwo, Osun, Nigeria
[6] Princeton Univ, Dept Ecol & Evolutionary Biol, Princeton, NJ USA
[7] Univ Ibadan, Anim Breeding & Genet Unit, Dept Anim Sci, Ibadan, Oyo, Nigeria
[8] South China Agr Univ, Dept Anim Genet Breeding & Reprod, Coll Anim Sci, Guangzhou, Peoples R China
[9] Adekunle Ajasin Univ, Fac Agr, Dept Anim Sci, Akungba Akoko, Ondo State, Nigeria
[10] Fed Coll Educ, Dept Agr Educ, Kano, Nigeria
[11] Taraba State Minist Agr & Nat Resources, Jalingo, Taraba, Nigeria
[12] Univ Benin, Dept Anim Sci, Benin, Nigeria
来源：
PEERJ | 2022年 / 10卷
关键词：
CYP2U1; Cytochrome b; Genetic diversity; Nigerian Muscovy duck; Population structure; CYTOCHROME-B GENE; POLYMORPHISM; PHYLOGENIES; GROWTH;
D O I：
10.7717/peerj.13236
中图分类号：
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
The domestic Muscovy duck (Cairina moschata) provide unique genetic resources patterned by both tropical environmental conditions and human activities, the evaluation of their genetic diversity and population structure will shade light on the mechanism of their remarkable adaptive capacities. We therefore analyzed the variation in mtDNA cytochrome b and nuclear DNA CYP2U1 sequences of 378 Nigerian Muscovy ducks (comprising of 287 de novo and 91 downloaded) plus 80 published sequences of Muscovy ducks from India. The results showed high haplotype diversity (0.800 +/- 0.023) among Nigerian Muscovy duck populations with 91 distinct haplotypes for the nuclear DNA CYP2U1 gene but low (0.266 +/- 0.033) for cytochrome b with 31 haplotypes. The median-joining networks of both markers grouped Nigerian Muscovy ducks into two; the first group consisting of only Nigerian Muscovy duck populations, and the second group Nigerian with Indian populations. Neutrality test results indicated that Nigerian populations experienced recent population expansion and/or genetic hitchhiking. A geographic signal was absent in line with previously studied poultry species in Nigeria. The most prominent haplotype dominated across all regions in Nigeria, which may be due to extensive genetic intermixing except for the Indian population (F-ST = 0.02550, P = 0.01075). This indicated low genetic differentiation between and within Nigerian Muscovy duck as revealed by the suitability of the nuclear DNA CYP2U1 gene.
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页数：18
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