A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci

被引:116
|
作者
Choquet, Helene [1 ]
Paylakhi, Seyyedhassan [2 ]
Kneeland, Stephen C. [3 ]
Thai, Khanh K. [1 ]
Hoffmann, Thomas J. [4 ,5 ]
Yin, Jie
Kvale, Mark N.
Banda, Yambazi [4 ]
Tolman, Nicholas G. [3 ]
Williams, Pete A. [3 ]
Schaefer, Catherine [1 ]
Melles, Ronald B. [6 ]
Risch, Neil [1 ,4 ,5 ]
John, Simon W. M. [3 ]
Nair, K. Saidas [2 ,7 ]
Jorgenson, Eric [1 ]
机构
[1] Kaiser Permanente No Calif, Div Res, Oakland, CA 94612 USA
[2] Univ Calif San Francisco, Sch Med, Dept Ophthalmol, San Francisco, CA 94143 USA
[3] Howard Hughes Med Inst, Jackson Lab, Bar Harbor, ME 04609 USA
[4] UCSF, Inst Human Genet, San Francisco, CA 94143 USA
[5] UCSF, Dept Epidemiol & Biostat, San Francisco, CA 94158 USA
[6] KPNC, Dept Ophthalmol, Redwood City, CA 94063 USA
[7] UCSF, Sch Med, Dept Anat, San Francisco, CA 94143 USA
来源
NATURE COMMUNICATIONS | 2018年 / 9卷
关键词
NAIL-PATELLA SYNDROME; GENETIC EPIDEMIOLOGY RESEARCH; HUMAN TRABECULAR MESHWORK; SOLUBLE ADENYLYL-CYCLASE; 1ST GLOBAL APPROVAL; AGING GERA COHORT; INTRAOCULAR-PRESSURE; GENOTYPE IMPUTATION; SUSCEPTIBILITY LOCI; COMMON VARIANTS;
D O I
10.1038/s41467-018-04555-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Primary open-angle glaucoma (POAG) is a leading cause of irreversible vision loss, yet much of the genetic risk remains unaccounted for, especially in African-Americans who have a higher risk for developing POAG. We conduct a multiethnic genome-wide association study (GWAS) of POAG in the GERA cohort, with replication in the UK Biobank (UKB), and vice versa, GWAS in UKB with replication in GERA. We identify 24 loci (P < 5.0 x 10(-8)), including 14 novel, of which 9 replicate (near FMNL2, PDE7B, TMTC2, IKZF2, CADM2, DGKG, ANKH, EXOC2, and LMX1B). Functional studies support intraocular pressure-related influences of FMNL2 and LMX1B, with certain Lmx1b mutations causing high IOP and glaucoma resembling POAG in mice. The newly identified loci increase the proportion of variance explained in each GERA race/ethnicity group, with the largest gain in African-Americans (0.5-3.1%). A meta-analysis combining GERA and UKB identifies 24 additional loci. Our study provides important insights into glaucoma pathogenesis.
引用
收藏
页数:14
相关论文
共 50 条
  • [21] Genome-Wide Pathway Approach to Dissecting Primary Open-Angle Glaucoma
    Bailey, Jessica Cooke
    Butkiewicz, Mariusz
    Pasquale, Louis R.
    Kang, Jae H.
    Hauser, Michael A.
    Allingham, Rand R.
    Wiggs, Janey L.
    Haines, Jonathan L.
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2016, 57 (12)
  • [22] A genome-wide scan for primary open-angle glaucoma in a Black population
    Nemesure, BB
    Jiao, X
    He, Q
    Wu, SY
    Hennis, A
    Leske, MC
    Agarwala, R
    Schaffer, AA
    Hejtmancik, JF
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2003, 44 : U303 - U303
  • [23] A genome-wide association study identifies six novel risk loci for primary biliary cholangitis
    Qiu, Fang
    Tang, Ruqi
    Zuo, Xianbo
    Shi, Xingjuan
    Wei, Yiran
    Zheng, Xiaodong
    Dai, Yaping
    Gong, Yuhua
    Wang, Lan
    Xu, Ping
    Zhu, Xiang
    Wu, Jian
    Han, Chongxu
    Gao, Yueqiu
    Zhang, Kui
    Jiang, Yuzhang
    Zhou, Jianbo
    Shao, Youlin
    Hu, Zhigang
    Tian, Ye
    Zhang, Haiyan
    Dai, Na
    Liu, Lei
    Wu, Xudong
    Zhao, Weifeng
    Zhang, Xiaomin
    Zang, Zhidong
    Nie, Jinshan
    Sun, Weihao
    Zhao, Yi
    Mao, Yuan
    Jiang, Po
    Ji, Hualiang
    Dong, Qing
    Li, Junming
    Li, Zhenzhong
    Bai, Xinli
    Li, Li
    Lin, Maosong
    Dong, Ming
    Li, Jinxin
    Zhu, Ping
    Wang, Chan
    Zhang, Yanqiu
    Jiang, Peng
    Wang, Yujue
    Jawed, Rohil
    Xu, Jing
    Zhang, Yu
    Wang, Qixia
    NATURE COMMUNICATIONS, 2017, 8
  • [24] A genome-wide association study identifies six novel risk loci for primary biliary cholangitis
    Fang Qiu
    Ruqi Tang
    Xianbo Zuo
    Xingjuan Shi
    Yiran Wei
    Xiaodong Zheng
    Yaping Dai
    Yuhua Gong
    Lan Wang
    Ping Xu
    Xiang Zhu
    Jian Wu
    Chongxu Han
    Yueqiu Gao
    Kui Zhang
    Yuzhang Jiang
    Jianbo Zhou
    Youlin Shao
    Zhigang Hu
    Ye Tian
    Haiyan Zhang
    Na Dai
    Lei Liu
    Xudong Wu
    Weifeng Zhao
    Xiaomin Zhang
    Zhidong Zang
    Jinshan Nie
    Weihao Sun
    Yi Zhao
    Yuan Mao
    Po Jiang
    Hualiang Ji
    Qing Dong
    Junming Li
    Zhenzhong Li
    Xinli Bai
    Li Li
    Maosong Lin
    Ming Dong
    Jinxin Li
    Ping Zhu
    Chan Wang
    Yanqiu Zhang
    Peng Jiang
    Yujue Wang
    Rohil Jawed
    Jing Xu
    Yu Zhang
    Qixia Wang
    Nature Communications, 8
  • [25] Genome-wide association studies in the hunt for genes causing primary open-angle glaucoma: a review
    Burdon, Kathryn P.
    CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY, 2012, 40 (04): : 358 - 363
  • [26] Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma
    Jessica N Cooke Bailey
    Stephanie J Loomis
    Jae H Kang
    R Rand Allingham
    Puya Gharahkhani
    Chiea Chuen Khor
    Kathryn P Burdon
    Hugues Aschard
    Daniel I Chasman
    Robert P Igo
    Pirro G Hysi
    Craig A Glastonbury
    Allison Ashley-Koch
    Murray Brilliant
    Andrew A Brown
    Donald L Budenz
    Alfonso Buil
    Ching-Yu Cheng
    Hyon Choi
    William G Christen
    Gary Curhan
    Immaculata De Vivo
    John H Fingert
    Paul J Foster
    Charles Fuchs
    Douglas Gaasterland
    Terry Gaasterland
    Alex W Hewitt
    Frank Hu
    David J Hunter
    Anthony P Khawaja
    Richard K Lee
    Zheng Li
    Paul R Lichter
    David A Mackey
    Peter McGuffin
    Paul Mitchell
    Sayoko E Moroi
    Shamira A Perera
    Keating W Pepper
    Qibin Qi
    Tony Realini
    Julia E Richards
    Paul M Ridker
    Eric Rimm
    Robert Ritch
    Marylyn Ritchie
    Joel S Schuman
    William K Scott
    Kuldev Singh
    Nature Genetics, 2016, 48 : 189 - 194
  • [27] Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma
    Bailey, Jessica N. Cooke
    Loomis, Stephanie J.
    Kang, Jae H.
    Allingham, R. Rand
    Gharahkhani, Puya
    Khor, Chiea Chuen
    Burdon, Kathryn P.
    Aschard, Hugues
    Chasman, Daniel I.
    Igo, Robert P., Jr.
    Hysi, Pirro G.
    Glastonbury, Craig A.
    Ashley-Koch, Allison
    Brilliant, Murray
    Brown, Andrew A.
    Budenz, Donald L.
    Buil, Alfonso
    Cheng, Ching-Yu
    Choi, Hyon
    Christen, William G.
    Curhan, Gary
    De Vivo, Immaculata
    Fingert, John H.
    Foster, Paul J.
    Fuchs, Charles
    Gaasterland, Douglas
    Gaasterland, Terry
    Hewitt, Alex W.
    Hu, Frank
    Hunter, David J.
    Khawaja, Anthony P.
    Lee, Richard K.
    Li, Zheng
    Lichter, Paul R.
    Mackey, David A.
    McGuffin, Peter
    Mitchell, Paul
    Moroi, Sayoko E.
    Perera, Shamira A.
    Pepper, Keating W.
    Qi, Qibin
    Realini, Tony
    Richards, Julia E.
    Ridker, Paul M.
    Rimm, Eric
    Ritch, Robert
    Ritchie, Marylyn
    Schuman, Joel S.
    Scott, William K.
    Singh, Kuldev
    NATURE GENETICS, 2016, 48 (02) : 189 - 194
  • [28] Genome-wide Association Study Identifies Novel Risk Loci for Apical Periodontitis
    Petty, Lauren E.
    Silva, Renato
    de Souza, Leticia Chaves
    Vieira, Alexandre R.
    Shaw, Douglas M.
    Below, Jennifer E.
    Letra, Ariadne
    JOURNAL OF ENDODONTICS, 2023, 49 (10) : 1276 - 1288
  • [29] The NEIGHBOR Consortium Primary Open-Angle Glaucoma Genome-wide Association Study: Rationale, Study Design, and Clinical Variables
    Wiggs, Janey L.
    Hauser, Michael A.
    Abdrabou, Wael
    Allingham, Robert Rand
    Budenz, Donald L.
    DelBono, Elizabeth
    Friedman, David S.
    Kang, Jae H.
    Gaasterland, Douglas
    Gaasterland, Terry
    Lee, Richard K.
    Lichter, Paul R.
    Loomis, Stephanie
    Liu, Yutao
    McCarty, Cathy
    Medeiros, Felipe A.
    Moroi, Sayoko E.
    Olson, Lana M.
    Realini, Anthony
    Richards, Julia E.
    Rozsa, Frank W.
    Schuman, Joel S.
    Singh, Kuldev
    Stein, Joshua D.
    Vollrath, Douglas
    Weinreb, Robert N.
    Wollstein, Gadi
    Yaspan, Brian L.
    Yoneyama, Sachiko
    Zack, Don
    Zhang, Kang
    Pericak-Vance, Margaret
    Pasquale, Louis R.
    Haines, Jonathan L.
    JOURNAL OF GLAUCOMA, 2013, 22 (07) : 517 - 525
  • [30] Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
    Puya Gharahkhani
    Eric Jorgenson
    Pirro Hysi
    Anthony P. Khawaja
    Sarah Pendergrass
    Xikun Han
    Jue Sheng Ong
    Alex W. Hewitt
    Ayellet V. Segrè
    John M. Rouhana
    Andrew R. Hamel
    Robert P. Igo
    Helene Choquet
    Ayub Qassim
    Navya S. Josyula
    Jessica N. Cooke Bailey
    Pieter W. M. Bonnemaijer
    Adriana Iglesias
    Owen M. Siggs
    Terri L. Young
    Veronique Vitart
    Alberta A. H. J. Thiadens
    Juha Karjalainen
    Steffen Uebe
    Ronald B. Melles
    K. Saidas Nair
    Robert Luben
    Mark Simcoe
    Nishani Amersinghe
    Angela J. Cree
    Rene Hohn
    Alicia Poplawski
    Li Jia Chen
    Shi-Song Rong
    Tin Aung
    Eranga Nishanthie Vithana
    Gen Tamiya
    Yukihiro Shiga
    Masayuki Yamamoto
    Toru Nakazawa
    Hannah Currant
    Ewan Birney
    Xin Wang
    Adam Auton
    Michelle K. Lupton
    Nicholas G. Martin
    Adeyinka Ashaye
    Olusola Olawoye
    Susan E. Williams
    Stephen Akafo
    Nature Communications, 12