A novel imaging method for correlating 2D light microscopic data and 3D volume data based on block-face imaging

被引:20
|
作者
Tajika, Yuki [1 ]
Murakami, Tohru [1 ]
Iijima, Keiya [2 ]
Gotoh, Hiroki [3 ]
Takahashi-Ikezawa, Maiko [4 ]
Ueno, Hitoshi [1 ]
Yoshimoto, Yuhei [2 ]
Yorifuji, Hiroshi [1 ]
机构
[1] Gunma Univ, Grad Sch Med, Dept Anat, 39-22 Showa Machi 3 Chome, Maebashi, Gunma 3718511, Japan
[2] Gunma Univ, Grad Sch Med, Dept Neurosurg, 39-22 Showa Machi 3 Chome, Maebashi, Gunma 3718511, Japan
[3] Nagoya Univ, Grad Sch Bioagr Sci, Lab Sericulture & Entomoresources, Chikusa Ku, Furo Cho, Nagoya, Aichi 4648601, Japan
[4] Gunma Univ, Grad Sch Hlth Sci, Dept Occupat Therapy, 39-22 Showa Machi 3 Chome, Maebashi, Gunma 3718511, Japan
来源
SCIENTIFIC REPORTS | 2017年 / 7卷
关键词
OPEN-SOURCE SOFTWARE; 3-DIMENSIONAL RECONSTRUCTION; BRAIN; ANATOMY;
D O I
10.1038/s41598-017-03900-9
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We have developed an imaging method designated as correlative light microscopy and block-face imaging (CoMBI), which contributes to improve the reliability of morphological analyses. This method can collect both the frozen sections and serial block-face images in a single specimen. The frozen section can be used for conventional light microscopic analysis to obtain 2-dimensional (2D) anatomical and molecular information, while serial block-face images can be used as 3-dimensional (3D) volume data for anatomical analysis. Thus, the sections maintain positional information in the specimen, and allows the correlation of 2D microscopic data and 3D volume data in a single specimen. The subjects can vary in size and type, and can cover most specimens encountered in biology. In addition, the required system for our method is characterized by cost-effectiveness. Here, we demonstrated the utility of CoMBI using specimens ranging in size from several millimeters to several centimeters, i.e., mouse embryos, human brainstem samples, and stag beetle larvae, and present successful correlation between the 2D light microscopic images and 3D volume data in a single specimen.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] A novel imaging method for correlating 2D light microscopic data and 3D volume data based on block-face imaging
    Yuki Tajika
    Tohru Murakami
    Keiya Iijima
    Hiroki Gotoh
    Maiko Takahashi-Ikezawa
    Hitoshi Ueno
    Yuhei Yoshimoto
    Hiroshi Yorifuji
    Scientific Reports, 7
  • [2] Correlative microscopy and block-face imaging (CoMBI): a 3D imaging method with wide applicability in the field of biological science
    Yuki Tajika
    Nobukazu Ishii
    Yoshihiro Morimura
    Kyosuke Fukuda
    Mitsuaki Shikada
    Tohru Murakami
    Sotaro Ichinose
    Yuhei Yoshimoto
    Hirohide Iwasaki
    Anatomical Science International, 2023, 98 : 353 - 359
  • [3] Correlative microscopy and block-face imaging (CoMBI): a 3D imaging method with wide applicability in the field of biological science
    Tajika, Yuki
    Ishii, Nobukazu
    Morimura, Yoshihiro
    Fukuda, Kyosuke
    Shikada, Mitsuaki
    Murakami, Tohru
    Ichinose, Sotaro
    Yoshimoto, Yuhei
    Iwasaki, Hirohide
    ANATOMICAL SCIENCE INTERNATIONAL, 2023, 98 (03) : 353 - 359
  • [4] Combined method of whole mount and block-face imaging: Acquisition of 3D data of gene expression pattern from conventional in situ hybridization
    Sutrisno, Aldy Anindyawan
    Katano, Wataru
    Kawamura, Hayata
    Tajika, Yuki
    Koshiba-Takeuchi, Kazuko
    DEVELOPMENT GROWTH & DIFFERENTIATION, 2023, 65 (01) : 56 - 64
  • [5] Face recognition based on 2D and 3D data fusion
    Krotewicz, Pawel
    Sankowski, Wojciech
    Nowak, Piotr Stefan
    INTERNATIONAL JOURNAL OF BIOMETRICS, 2015, 7 (01) : 69 - 81
  • [6] Serial block-face imaging system for both 3D morphology and section histology
    Tajika, Y.
    Takahashi, M.
    Murakami, T.
    Ueno, H.
    Yorifuji, H.
    MOLECULAR BIOLOGY OF THE CELL, 2015, 26
  • [7] Resolution enhancement for light field microscopic 3D imaging based on polarization and data fusion
    Shi, Wenqi
    Kong, Lingbao
    AOPC 2023:COMPUTING IMAGING TECHNOLOGY, 2023, 12967
  • [8] Registering 2D and 3D imaging data of bone during healing
    Hoerth, Rebecca M.
    Baum, Daniel
    Knoetel, David
    Prohaska, Steffen
    Willie, Bettina M.
    Duda, Georg N.
    Hege, Hans-Christian
    Fratzl, Peter
    Wagermaier, Wolfgang
    CONNECTIVE TISSUE RESEARCH, 2015, 56 (02) : 133 - 143
  • [9] Imaging system for creating 3D block-face cryo-images of whole mice
    Roy, Debashish
    Breen, Michael
    Salvado, Olivier
    Heinzel, Meredith
    McKinley, Eliot
    Wilson, David
    MEDICAL IMAGING 2006: PHYSIOLOGY, FUNCTION, AND STRUCTURE FROM MEDICAL IMAGES PTS 1 AND 2, 2006, 6143
  • [10] GPU-based visualization techniques for 3D microscopic imaging data
    Wang, Qiqi
    Sun, Yinlong
    Robinson, J. Paul
    COMPUTATIONAL IMAGING V, 2007, 6498