Potential Leads from Liquorice Against SARS-CoV-2 Main Protease using Molecular Docking Simulation Studies

被引:13
|
作者
Sinha, Saurabh K. [1 ]
Prasad, Satyendra K. [2 ]
Islam, Md Ataul [3 ,4 ]
Chaudhary, Sushil K. [6 ]
Singh, Shashikant [7 ]
Shakya, Anshul [5 ]
机构
[1] Mohanlal Shukhadia Univ, Dept Pharmaceut Sci, Udaipur 313001, Rajasthan, India
[2] Rashtrast Tukad Maharaj Nagpur Univ, Dept Pharmaceut Sci, Nagpur 440033, Maharashtra, India
[3] Univ Manchester, Fac Biol Med & Hlth, Sch Hlth Sci, Div Pharm & Optometry, Oxford Rd, Manchester M13 9PL, Lancs, England
[4] Univ Kwazulu Natal, Sch Hlth Sci, Westville Campus, Durban, South Africa
[5] Dibrugarh Univ, Fac Sci & Engn, Dept Pharmaceut Sci, Dibruarh 786004, Assam, India
[6] DIT Univ, Fac Pharm, Dehra Dun 248009, Uttarakhand, India
[7] Varanasi Coll Pharm, Varanasi 221105, Uttar Pradesh, India
关键词
COVID-19; glycyrrhizic acid; isoliquiritin apioside; glyasperin; liquiritin; 1-Methoxyphaseollidin; VIRUS; DRUG;
D O I
10.2174/1386207323999200817103148
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Aim and Objective: At present, the world is facing a global pandemic threat of SARS-CoV-2 or COVID-19 and to date, there are no clinically approved vaccines or antiviral drugs available for the treatment of coronavirus infections. Studies conducted in China recommended the use of liquorice (Glycyrrhiza species), an integral medicinal herb of traditional Chinese medicine, in the deactivation of COVID-19. Therefore, the present investigation was undertaken to identify the leads from the liquorice plant against COVID-19 using molecular docking simulation studies. Materials and Methods: A set of reported bioactive compounds of liquorice were investigated for COVID-19 main protease (Mpro) inhibitory potential. The study was conducted on Autodock vina software using COVID-19 Mpro as a target protein having PDB ID: 6LU7. Results: Out of the total 20 docked compounds, only six compounds showed the best affinity towards the protein target, which included glycyrrhizic acid, isoliquiritin apioside, glyasperin A, liquiritin, 1-methoxyphaseollidin and hedysarimcoumestan B. From the overall observation, glycyrrhizic acid followed by isoliquiritin apioside demonstrated the best affinity towards Mpro representing the binding energy of -8.6 and - 7.9 Kcal/mol, respectively. Nevertheless, the other four compounds were also quite comparable with the later one. Conclusion: From the present investigation, we conclude that the compounds having oxane ring and chromenone ring substituted with hydroxyl 3-methylbut-2-enyl group could be the best alternative for the development of new leads from liquorice plant against COVID-19.
引用
收藏
页码:591 / 597
页数:7
相关论文
共 50 条
  • [31] Identification of potential phytochemicals from Citrus Limon against main protease of SARS-CoV-2: molecular docking, molecular dynamic simulations and quantum computations
    Khan, Jishan
    Sakib, Shahenur Alam
    Mahmud, Shafi
    Khan, Zidan
    Islam, Mohammad Nazmul
    Sakib, Mahfuz Ahmed
    Bin Emran, Talha
    Simal-Gandara, Jesus
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (21): : 10741 - 10752
  • [32] Natural inhibitors of SARS-CoV-2 main protease: structure based pharmacophore modeling, molecular docking and molecular dynamic simulation studies
    Mohammad Halimi
    Parvindokht Bararpour
    Journal of Molecular Modeling, 2022, 28
  • [33] Natural inhibitors of SARS-CoV-2 main protease: structure based pharmacophore modeling, molecular docking and molecular dynamic simulation studies
    Halimi, Mohammad
    Bararpour, Parvindokht
    JOURNAL OF MOLECULAR MODELING, 2022, 28 (09)
  • [34] Molecular Docking and Dynamic Simulation Revealed the Potential Inhibitory Activity of Opioid Compounds Targeting the Main Protease of SARS-CoV-2
    Mahmoud, Samaher S. A.
    Elkaeed, Eslam B.
    Alsfouk, Aisha A.
    Abdelhafez, Elshimaa M. N.
    BIOMED RESEARCH INTERNATIONAL, 2022, 2022
  • [35] In silico prediction of potential inhibitors for the Main protease of SARS-CoV-2 using molecular docking and dynamics simulation based drug-repurposing
    Kumar, Yogesh
    Singh, Harvijay
    Patel, Chirag N.
    JOURNAL OF INFECTION AND PUBLIC HEALTH, 2020, 13 (09) : 1210 - 1223
  • [36] In vitro antimicrobial, physicochemical, pharmacokinetics and molecular docking studies of benzoyl uridine esters against SARS-CoV-2 main protease
    Matin, Mohammed Mahbubul
    Uzzaman, Monir
    Chowdhury, Shagir Ahammad
    Bhuiyan, Md Mosharef Hossain
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (08): : 3668 - 3680
  • [37] Identification of potential inhibitors of SARS-CoV-2 main protease from Aloe vera compounds: A molecular docking study
    Mpiana, Pius T.
    Ngbolua, Koto-te-Nyiwa
    Tshibangu, Damien S. T.
    Kilembe, Jason T.
    Gbolo, Benjamin Z.
    Mwanangombo, Domaine T.
    Inkoto, Clement L.
    Lengbiye, Emmanuel M.
    Mbadiko, Clement M.
    Matondo, Aristote
    Bongo, Gedeon N.
    Tshilanda, Dorothee D.
    CHEMICAL PHYSICS LETTERS, 2020, 754
  • [38] Combined molecular docking and dynamics simulations studies of natural compounds as potent inhibitors against SARS-CoV-2 main protease
    Ouassaf, Mebarka
    Belaidi, Salah
    Chtita, Samir
    Lanez, Touhami
    Abul Qais, Faizan
    Amiruddin, Hashmi Md
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (21): : 11264 - 11273
  • [39] Drug repurposing for SARS-CoV-2 main protease: Molecular docking and molecular dynamics investigations
    Omer, Samia E.
    Ibrahim, Tawasol M.
    Krar, Omer A.
    Ali, Amna M.
    Makki, Alaa A.
    Ibraheem, Walaa
    Alzain, Abdulrahim A.
    BIOCHEMISTRY AND BIOPHYSICS REPORTS, 2022, 29
  • [40] Computational Docking Study of Calanolides as Potential Inhibitors of SARS-CoV-2 Main Protease
    Benalia, Abdelkrim
    Abdeldjebar, Hasnia
    Badji, Taqiy Eddine
    FRENCH-UKRAINIAN JOURNAL OF CHEMISTRY, 2022, 10 (01): : 48 - 59