Transposable element derived DNaseI-hypersensitive sites in the human genome

被引:23
|
作者
Marino-Ramirez, Leonardo [1 ]
Jordan, I. King [1 ]
机构
[1] NIH, Natl Ctr Biotechnol Informat, Bethesda, MD 20894 USA
关键词
D O I
10.1186/1745-6150-1-20
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Transposable elements (TEs) are abundant genomic sequences that have been found to contribute to genome evolution in unexpected ways. Here, we characterize the evolutionary and functional characteristics of TE-derived human genome regulatory sequences uncovered by the high throughput mapping of DNasel-hypersensitive (HS) sites. Conclusion: The results reported here support the notion that TEs provide a specific genome-wide mechanism for generating functionally relevant gene regulatory divergence between evolutionary lineages.
引用
收藏
页数:14
相关论文
共 50 条
  • [21] Identification of DNase I hypersensitive sites in the human genome by multiple sequence descriptors
    Jin, Yan-Ting
    Tan, Yang
    Gan, Zhong-Hua
    Hao, Yu-Duo
    Wang, Tian-Yu
    Lin, Hao
    Tang, Bo
    METHODS, 2024, 229 : 125 - 132
  • [22] CONSTITUTIVE AND LIGHT-INDUCED DNASEI HYPERSENSITIVE SITES IN THE RBCS GENES OF PEA (PISUM-SATIVUM)
    GORZ, A
    SCHAFER, W
    HIRASAWA, E
    KAHL, G
    PLANT MOLECULAR BIOLOGY, 1988, 11 (05) : 561 - 573
  • [23] Transposable element evolution in plant genome ecosystems
    Pulido, Marc
    Casacuberta, Josep M.
    CURRENT OPINION IN PLANT BIOLOGY, 2023, 75
  • [24] The changes of binding proteins at the 2nd DNaseI-hypersensitive site of the rat α1-acid glycoprotein gene after thyroid hormone or glucocorticoid treatment.
    Ohba, Y
    Tokunaga, H
    Uchino, H
    Matsukawa, T
    FASEB JOURNAL, 1997, 11 (09): : A1374 - A1374
  • [25] TISSUE-SPECIFIC DNASEI HYPERSENSITIVE SITES IN THE 5'-FLANKING SEQUENCES OF THE TRYPTOPHAN OXYGENASE AND THE TYROSINE AMINOTRANSFERASE GENES
    BECKER, P
    RENKAWITZ, R
    SCHUTZ, G
    EMBO JOURNAL, 1984, 3 (09): : 2015 - 2020
  • [26] Transposable element derived enhancers in ovarian cancer
    Nguyen, Lily L.
    Ivancevic, Atma
    Bitler, Benjamin G.
    Chuong, Edward B.
    CANCER RESEARCH, 2024, 84 (06)
  • [27] Detection and annotation of transposable element insertions and deletions on the human genome using nanopore sequencing
    Cuenca-Guardiola, Javier
    de la Morena-Barrio, Belen
    Navarro-Manzano, Esther
    Stevens, Jonathan
    Ouwehand, Willem H.
    Gleadall, Nicholas S.
    Corral, Javier
    Fernandez-Breis, Jesualdo Tomas
    ISCIENCE, 2023, 26 (11)
  • [28] Transposable element contributions to plant gene and genome evolution
    Jeffrey L. Bennetzen
    Plant Molecular Biology, 2000, 42 : 251 - 269
  • [29] Impact of transposable elements on the human genome
    Deragon, JM
    Capy, P
    ANNALS OF MEDICINE, 2000, 32 (04) : 264 - 273
  • [30] Transposable element orientation bias in the Drosophila melanogaster genome
    Cutter, AD
    Good, JM
    Pappas, CT
    Saunders, MA
    Starrett, DM
    Wheeler, TJ
    JOURNAL OF MOLECULAR EVOLUTION, 2005, 61 (06) : 733 - 741