Exome Sequencing Reveals AGBL5 as Novel Candidate Gene and Additional Variants for Retinitis Pigmentosa in Five Turkish Families

被引:31
|
作者
Kastner, Simone [1 ]
Thiemann, Ina-Janine [1 ]
Dekomien, Gabriele [1 ]
Petrasch-Parwez, Elisabeth [2 ]
Schreiber, Sabrina [1 ]
Akkad, Denis A. [1 ]
Gerding, Wanda M. [1 ]
Hoffjan, Sabine [1 ]
Gunes, Sezgin [3 ]
Gunes, Selcuk [4 ]
Bagci, Hasan [3 ]
Epplen, Joerg T. [1 ,5 ]
机构
[1] Ruhr Univ Bochum, Humangenet, D-44780 Bochum, Germany
[2] Ruhr Univ Bochum, Neuroanat & Mol Brain Res, D-44780 Bochum, Germany
[3] Ondokuz Mayis Univ, Fac Med, Dept Med Biol, Samsun, Turkey
[4] Samsun Educ & Res Hosp, Dept Ophthalmol, Samsun, Turkey
[5] Univ Witten Herdecke, Fac Hlth, Witten, Germany
关键词
exome sequencing; AGBL5; CCP5; retinitis pigmentosa; CYTOSOLIC CARBOXYPEPTIDASE; MUTATIONS; CILIA; DATABASE; DISEASE; GENOME; IDENTIFICATION; EXPRESSION; DOMINANT; EYS;
D O I
10.1167/iovs.15-17473
中图分类号
R77 [眼科学];
学科分类号
100212 ;
摘要
PURPOSE. Retinitis pigmentosa (RP) is the most common inherited retinal disease with high genetic heterogeneity and variable phenotypes. Characteristic symptoms include night blindness and progressive loss of visual field, leading to blindness. Mutations in > 60 genes have been identified to date as causative for RP, and additional candidate genes are assumed. METHODS. To find the disease-causing mutations in the affected members of five Turkish families, we sequenced whole exomes using an Illumina platform. RESULTS. Among all candidate genes for retinal degeneration we found two previously known sequence variations: a 4 bp deletion in the RPGR gene (c. 1662_1665delAGAA; p.Glu555-Glyfs*14) and a recently described USH1-causing missense mutation in MYO7A (c. 472G>A, p.Gly158Arg). Furthermore, a novel 1 bp deletion in the VCAN gene (c. 5118delA; p.Ser1707Valfs*44) was detected as well as a large deletion in EYS, spanning similar to 400kb and comprising exons 16-26 (p.fs*). In one family, exome analyses of two affected individuals revealed a homozygous missense mutation (c.883G>A; p.Asp295Asn) in the AGBL5 (Agbl5; CCP5) gene, previously not reported to be associated with RP. RNA and protein analyses showed expression in human retina, as well as in mouse retina, brain and testis. Furthermore, cDNA analyses indicate the existence of tissue-specific AGBL5 splice variations in humans. AGBL5/CCP5 immunoreactivity was also visualized in human and mouse retinae. CONCLUSION. Due to the characteristic RP phenotype in patients carrying the AGBL5 missense mutation we suggest this gene as a candidate for a new form of autosomal recessively inherited RP and recommend further investigation to confirm this hypothesis.
引用
收藏
页码:8045 / 8053
页数:9
相关论文
共 50 条
  • [1] Establishing the involvement of the novel gene AGBL5 in retinitis pigmentosa by whole genome sequencing
    Branham, Kari
    Matsui, Hiroko
    Biswas, Pooja
    Guru, Aditya A.
    Hicks, Michael
    Suk, John J.
    Li, He
    Jakubosky, David
    Long, Tao
    Telenti, Amalio
    Nariai, Naoki
    Heckenlively, John R.
    Frazer, Kelly A.
    Sieving, Paul A.
    Ayyagari, Radha
    PHYSIOLOGICAL GENOMICS, 2016, 48 (12) : 922 - 927
  • [2] Variants in the AGBL5 gene are responsible for autosomal recessive Retinitis pigmentosa with hearing loss
    Karali, Marianthi
    Garcia-Garcia, Gema
    Kaminska, Karolina
    Altalbishi, Alaa
    Cancellieri, Francesca
    Testa, Francesco
    Barillari, Maria Rosaria
    Panagiotou, Evangelia S.
    Psillas, George
    Vaclavik, Veronika
    Tran, Viet H.
    Janeschitz-Kriegl, Lucas
    Scholl, Hendrik P. N.
    Salameh, Manar
    Barberan-Martinez, Pilar
    Rodriguez-Munoz, Ana
    Armengot, Miguel
    Scarpato, Margherita
    Zeuli, Roberta
    Quinodoz, Mathieu
    Simonelli, Francesca
    Rivolta, Carlo
    Banfi, Sandro
    Millan, Jose M.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024,
  • [3] Comparative exome sequencing reveals novel candidate genes for retinitis pigmentosa
    Yi, Zhen
    Ouyang, Jiamin
    Sun, Wenmin
    Li, Shiqiang
    Xiao, Xueshan
    Zhang, Qingjiong
    EBIOMEDICINE, 2020, 56
  • [4] Whole exome sequencing reveals novel candidate gene variants for MODY
    Capan, Ozlem Yalcin
    Aydin, Neslihan
    Yilmaz, Temel
    Berber, Ergul
    CLINICA CHIMICA ACTA, 2020, 510 : 97 - 104
  • [5] comparative exome sequencing reveals novel candidate genes for retinitis pigmentosa (vol 56, 102792, 2020)
    Yi, Zhen
    Ouyang, Jiamin
    Sun, Wenmin
    Li, Shiqiang
    Xiao, Xueshan
    Zhang, Qingjiong
    EBIOMEDICINE, 2022, 77
  • [6] Exome sequencing identified five novel USH2A variants in Korean patients with retinitis pigmentosa
    Jung, SeungHee
    Park, Young Chan
    Lee, DongHee
    Kim, SiYeon
    Kim, Sang-Mo
    Kim, YoungJin
    Lee, DongHyun
    Hyun, JaeJoung
    Koh, InSong
    Lee, Jong-Young
    OPHTHALMIC GENETICS, 2023, 44 (02) : 163 - 170
  • [7] Whole-exome sequencing reveals POC5 as a novel gene associated with autosomal recessive retinitis pigmentosa
    Hubshman, Monika Weisz
    Broekman, Sanne
    van Wijk, Erwin
    Cremers, Frans
    Abu-Diab, Alaa
    Khateb, Samer
    Tzur, Shay
    Lagovsky, Irina
    Smirin-Yosef, Pola
    Sharon, Dror
    Haer-Wigman, Lonneke
    Banin, Eyal
    Basel-Vanagaite, Lina
    de Vrieze, Erik
    HUMAN MOLECULAR GENETICS, 2018, 27 (04) : 614 - 624
  • [8] Identification of novel variants in retinitis pigmentosa genes by whole-exome sequencing
    Kocaaga, Ayca
    Akoz, Irem Ozturk
    Demir, Nihal Ulus
    Paksoy, Baris
    REVISTA DA ASSOCIACAO MEDICA BRASILEIRA, 2023, 69 (05):
  • [9] Exome sequencing reveals CHM mutations in six families with atypical choroideremia initially diagnosed as retinitis pigmentosa
    Li, Shiqiang
    Guan, Liping
    Fang, Shaohua
    Jiang, Hui
    Xiao, Xueshan
    Yang, Jianhua
    Wang, Panfeng
    Yin, Ye
    Guo, Xiangming
    Wang, Jun
    Zhang, Jianguo
    Zhang, Qingjiong
    INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 2014, 34 (02) : 573 - 577
  • [10] Whole-exome sequencing reveals a novel CHM gene mutation in a family with choroideremia initially diagnosed as retinitis pigmentosa
    Hui Guo
    Jisheng Li
    Fei Gao
    Jiangxia Li
    Xinyi Wu
    Qiji Liu
    BMC Ophthalmology, 15