Genome Sequences of 408 SARS-CoV-2 Strains Obtained from Nasopharyngeal Swabs in La Araucania Region, Southern Chile

被引：0
|
作者：
Abanto Marin, Michel [1 ]
Leyton-Carcaman, Benjamin [1 ]
Vazquez, Claudio [1 ]
Duran-Vinet, Benjamin [1 ,2 ]
Bobadilla, Katterin [3 ]
Rodriguez-Ruiz, Claudio [4 ]
San Martin, Andres [4 ]
Riquelme, Pia [3 ]
Baez, Fernando [3 ]
Jose Carrasco, Maria [3 ]
Rodriguez-Moretti, Gloria [3 ]
Cerda, Alvaro [5 ]
Saavedra, Nicolas [6 ]
de la Luz Mora, Maria [1 ]
机构：
[1] Univ La Frontera, Genom & Bioinformat Unit, Sci & Technol Bioresource Nucleus BIOREN, Temuco, Chile
[2] Univ La Frontera, Innovat & Entrepreneurship Inst iDEAUFRO, Temuco, Chile
[3] Seremi Salud Reg La Araucania, Dept Salud Publ & Planificac Sanitaria, Subdept Epidemiol, Temuco, Chile
[4] Hosp Dr Hernan Henriquez Aravena Temuco, Subdept Lab Clin, Temuco, Chile
[5] Univ La Frontera, Ctr Excellence Translat Med Sci & Technol Bioreso, Dept Basic Sci, Temuco, Chile
[6] Univ La Frontera, Ctr Mol Biol & Pharmacogenet, Sci & Technol Bioresource Nucleus BIOREN, Temuco, Chile
来源：
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2022年 / 11卷 / 04期
关键词：
D O I：
10.1128/mra.00121-22
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
Here, we announce the genome sequences of 408 strains of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) obtained from nasopharyngeal swabs in the Araucania Region, Southern Chile. The genomes obtained are valuable to expand the availability of useful genomic data for future epidemiological studies of SARS-CoV-2 in Chile and worldwide.
引用
收藏
页数：9
相关论文
共 50 条
  • [31] Enrichment of SARS-CoV-2 sequence from nasopharyngeal swabs whilst identifying the nasal microbiome
    Alrezaihi, Abdulrahman
    Penrice-Randal, Rebekah
    Dong, Xiaofeng
    Prince, Tessa
    Randle, Nadine
    Semple, Malcolm G.
    Openshaw, Peter J. M.
    MacGill, Tracy
    Myers, Todd
    Orr, Robert
    Zakotnik, Samo
    Suljic, Alen
    Avsic-Zupanc, Tatjana
    Petrovec, Miroslav
    Korva, Misa
    AlJabr, Waleed
    Hiscox, Julian A.
    JOURNAL OF CLINICAL VIROLOGY, 2024, 171
  • [32] Study of SARS-CoV-2 in semen from asymptomatic donors with the presence of virus in nasopharyngeal swabs
    Alvarez, Gemma
    Molina, Marta
    Castilla, Jose A.
    Clavero, Ana
    Gonzalvo, Maria C.
    Sampedro, Antonio
    Bernat, Nuria
    Caba, Octavio
    REPRODUCTIVE BIOMEDICINE ONLINE, 2023, 47 (06)
  • [33] Persistence of SARS-CoV-2 viral RNA in nasopharyngeal swabs after death
    Scimeca, Manuel
    Mauriello, Silvestro
    Servadei, Francesca
    Caggiano, Bartolo
    Ciotti, Marco
    Anemona, Lucia
    Montanaro, Manuela
    Giacobbi, Erica
    Treglia, Michele
    Bernardini, Sergio
    Marsella, Luigi Tonino
    Schillaci, Orazio
    Mauriello, Alessandro
    JOURNAL OF INFECTION, 2021, 82 (05) : E3 - E5
  • [34] Detection of SARS-CoV-2 in Saliva and Nasopharyngeal Swabs According to Viral Variants
    Salmona, Maud
    Chaix, Marie-Laure
    Feghoul, Linda
    Mahjoub, Nadia
    Maylin, Sarah
    Schnepf, Nathalie
    Jacquier, Herve
    Walle, Eve-Marie
    Helary, Marion
    Mellon, Guillaume
    Osinski, Nathalie
    Zebiche, Widad
    Achili, Yacine
    Amarsy, Rishma
    Mahe, Veronique
    Le Goff, Jerome
    Delaugerre, Constance
    MICROBIOLOGY SPECTRUM, 2022, 10 (06):
  • [35] Rapid and sensitive detection of SARS-CoV-2 variants in nasopharyngeal swabs and wastewaters
    D'Agostino, Ylenia
    Rocco, Teresa
    Ferravante, Carlo
    Porta, Amalia
    Tosco, Alessandra
    Cappa, Valeria Mirici
    Lamberti, Jessica
    Alexandrova, Elena
    Memoli, Domenico
    Terenzi, Ilaria
    Pironti, Concetta
    Motta, Oriana
    Weisz, Alessandro
    Giurato, Giorgio
    Rizzo, Francesca
    DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 2022, 102 (04)
  • [36] Proteins associated with neutrophil degranulation are upregulated in nasopharyngeal swabs from SARS-CoV-2 patients
    Akgun, Emel
    Tuzuner, Mete Bora
    Sahin, Betul
    Kilercik, Meltem
    Kulah, Canan
    Cakiroglu, Hacer Nur
    Serteser, Mustafa
    Unsal, Ibrahim
    Baykal, Ahmet Tarik
    PLOS ONE, 2020, 15 (10):
  • [37] Investigation of saliva, tongue swabs and buccal swabs as alternative specimen types to nasopharyngeal swabs for SARS-CoV-2 testing
    Connor, M. C.
    Copeland, M.
    Curran, T.
    JOURNAL OF CLINICAL VIROLOGY, 2022, 146
  • [38] Parallel testing of 241 clinical nasopharyngeal swabs for the detection of SARS-CoV-2 virus on the Cepheid Xpert Xpress SARS-CoV-2 and the Roche cobas SARS-CoV-2 assays
    Tham, Jason Wei Ming
    Ng, Shu Chi
    Chai, Chean Nee
    Png, Siyu
    Tan, Eunice Jia Min
    Ng, Li Jie
    Chua, Rui Ping
    Sani, Musa
    Chiang, Donald
    Tan, Ker Xin
    Tee, Nancy Wen Sim
    Jureen, Roland
    Tan, Shaun S.
    Yan, Gabriel
    Yan, Benedict
    Lee, Chun Kiat
    CLINICAL CHEMISTRY AND LABORATORY MEDICINE, 2021, 59 (02) : E45 - E48
  • [39] Evaluation of SARS-CoV-2 quantification from oropharyngeal swabs, nasopharyngeal swabs, and naso-oropharyngeal swabs: A cross-sectional study
    Ibrahim, Fera
    Natasha, Augustine
    Yasmon, Andi
    Rizal, Chairunnisa Tawadhu
    Fithriyah
    Karuniawati, Anis
    Saharman, Yulia Rosa
    Sudarmono, Pratiwi
    HELIYON, 2024, 10 (07)
  • [40] SARS-CoV-2 RNA identification in nasopharyngeal swabs: issues in pre-analytics
    Basso, Daniela
    Aita, Ada
    Navaglia, Filippo
    Franchin, Elisa
    Fioretto, Paola
    Moz, Stefania
    Bozzato, Dania
    Zambon, Carlo-Federico
    Martin, Barbara
    Dal Pra, Chiara
    Crisanti, Andrea
    Plebani, Mario
    CLINICAL CHEMISTRY AND LABORATORY MEDICINE, 2020, 58 (09) : 1579 - 1586
12345