DNA as a metrology standard for length and force measurements with optical tweezers

被引:44
|
作者
Rickgauer, John Peter [1 ]
Fuller, Derek N. [1 ]
Smith, Douglas E. [1 ]
机构
[1] Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
关键词
D O I
10.1529/biophysj.106.089524
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Optical tweezers have broad applications in studies of structures and processes in molecular and cellular biophysics. Use of optical tweezers for quantitative molecular-scale measurement requires careful calibration in physical units. Here we show that DNA molecules may be used as metrology standards for force and length measurements. Analysis of DNA molecules of two specific lengths allows simultaneous determination of all essential measurement parameters. We validate this biological-calibration method experimentally and with simulated data, and show that precisions in determining length scale factor (similar to 0.2%), length offset (similar to 0.03%), force scale factor (similar to 2%), and compliance of the traps (similar to 3%) are limited only by current measurement variation, much of which arises from polydispersity of the microspheres (similar to 2%). We find this procedure to be simpler and more convenient than previous methods, and suggest that it provides an easily replicated standard that can insure uniformity of measurements made in different laboratories.
引用
收藏
页码:4253 / 4257
页数:5
相关论文
共 50 条
  • [31] Force measurements of the disruption of the nascent polypeptide chain from the ribosome by optical tweezers
    Katranidis, Alexandros
    Grange, Wilfried
    Schlesinger, Ramona
    Choli-Papadopoulou, Theodora
    Brueggemann, Dorothea
    Hegner, Martin
    Bueldt, Georg
    FEBS LETTERS, 2011, 585 (12): : 1859 - 1863
  • [32] Out-of-equilibrium force measurements of dual-fiber optical tweezers
    Fick, Jochen
    OPTICS LETTERS, 2016, 41 (24) : 5716 - 5719
  • [33] Protein DNA Interaction Measured with Ultra Fast Force Clamp Optical Tweezers
    Monico, Carina
    Tempestini, Alessia
    Vanzi, Francesco
    Pavone, Francesco
    Capitanio, Marco
    BIOPHYSICAL JOURNAL, 2014, 106 (02) : 21A - 21A
  • [34] Mechanochemical properties of DNA origami nanosprings revealed by force jumps in optical tweezers
    Karna, Deepak
    Pan, Wei
    Pandey, Shankar
    Suzuki, Yuki
    Mao, Hanbin
    NANOSCALE, 2021, 13 (18) : 8425 - 8430
  • [35] Probing the Casimir force with optical tweezers
    Ether, D. S., Jr.
    Pires, L. B.
    Umrath, S.
    Martinez, D.
    Ayala, Y.
    Pontes, B.
    Araujo, G. R. de S.
    Frases, S.
    Ingold, G. -L.
    Rosa, F. S. S.
    Viana, N. B.
    Nussenzveig, H. M.
    Maia Neto, P. A.
    EPL, 2015, 112 (04)
  • [36] DNA Polymerization in Optical Tweezers
    Ziedaite, Gabija
    Wallin, Anders
    Ojala, Heikki
    Hanhijarvi, Kalle
    Haeggstrom, Edward
    Bamford, Dennis
    BIOPHYSICAL JOURNAL, 2010, 98 (03) : 67A - 67A
  • [37] Stretching DNA with optical tweezers
    Wang, MD
    Yin, H
    Landick, R
    Gelles, J
    Block, SM
    BIOPHYSICAL JOURNAL, 1997, 72 (03) : 1335 - 1346
  • [38] Optical tweezers expose DNA
    Anon
    Photonics Spectra, 2002, 36 (04)
  • [39] Interrogating Biology with Force: Single Molecule High-Resolution Measurements with Optical Tweezers
    Capitanio, Marco
    Pavone, Francesco S.
    BIOPHYSICAL JOURNAL, 2013, 105 (06) : 1293 - 1303
  • [40] Momentum measurements with holographic optical tweezers for exploring force detection capabilities on irregular samples
    Catala, Frederic
    Marsa, Ferran
    Farre, Arnau
    Montes-Usategui, Mario
    Martin-Badosa, Estela
    OPTICAL TRAPPING AND OPTICAL MICROMANIPULATION XI, 2014, 9164