Cuproptosis-Related Genes Are Associated with Cell Cycle and Serve as the Prognostic Signature for Clear Cell Renal Cell Carcinoma

被引:2
|
作者
Guo, Tuanjie [1 ]
Zhang, Jian [1 ]
Yuan, Zhihao [1 ]
Tang, Heting [1 ]
Wang, Tao [1 ]
Wang, Xiang [1 ]
Chen, Siteng [2 ]
机构
[1] Shanghai Jiao Tong Univ, Shanghai Gen Hosp, Dept Urol, Sch Med, Shanghai 200080, Peoples R China
[2] Shanghai Jiao Tong Univ, Renji Hosp, Dept Urol, Sch Med, Shanghai 200080, Peoples R China
基金
中国国家自然科学基金;
关键词
cuproptosis; clear cell renal cell carcinoma; prognosis; signature; cell cycle;
D O I
10.3390/jcm11247507
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Cuproptosis is a newly discovered type of cell death. The role and potential mechanism of Cuproptosis-related genes (CRGs) in the prognosis of cancer patients are not fully understood. In this study, we included two cohorts of clear cell renal cell carcinoma patients, TCGA and E-MTAB-1980. The TCGA cohort is used as a training set to construct a CRG signature using the LASSO-cox regression analysis, and E-MTAB-1980 is used as a cohort for verification. A total of eight genes (FDX1, LIAS, LIPT1, DLAT, PDHA1, MTF1, GLS, CDKN2A) were screened to construct a prognostic model in the TCGA cohort. There is a significant difference in OS (p < 0.0001) between the high and low cuproptosis score group, and a similar difference is also observed in the OS (p = 0.0054) of the E-MTAB-1980 cohort. The area under the ROC curves (AUC) were 0.87, 0.82, and 0.78 at 1, 3, and 5 years in the TCGA cohort, respectively. Finally, gene set enrichment analysis revealed that CRGs were associated with cell cycle and mitotic signaling pathways.
引用
收藏
页数:12
相关论文
共 50 条
  • [31] Prognostic value of immune-related genes in clear cell renal cell carcinoma
    Wan, Bangbei
    Liu, Bo
    Huang, Yuan
    Yu, Gang
    Lv, Cai
    AGING-US, 2019, 11 (23): : 11474 - 11489
  • [32] The prognostic value and immune landscape of a cuproptosis-related lncRNA signature in head and neck squamous cell carcinoma
    Li, Yao Jun
    Li, Hai Yan
    Zhang, Quan
    Wei, Sheng Li
    FRONTIERS IN GENETICS, 2022, 13
  • [33] Molecular prognostic signature in clear cell renal carcinoma
    Brunelli, M.
    Gobbo, S.
    Segala, D.
    Ficarra, V.
    Novara, G.
    Martignoni, G.
    VIRCHOWS ARCHIV, 2011, 459 : S56 - S56
  • [34] Development and Validation of a Necroptosis-Related Prognostic Signature for Clear Cell Renal Cell Carcinoma
    Tao, Y. M.
    Ruan, H.
    Dang, W. P.
    Xu, Xinxin
    Li, Y. S.
    INDIAN JOURNAL OF PHARMACEUTICAL SCIENCES, 2022, 84 : 156 - 167
  • [35] Identification of an immune-related eRNA prognostic signature for clear cell renal cell carcinoma
    Lv, Yang
    Niu, Lili
    Li, Qiang
    Shao, Wenchuan
    Yan, Xinghan
    Li, Yang
    Yue, Yulin
    Chen, Hongqi
    AGING-US, 2024, 16 (03): : 2232 - 2248
  • [36] Identification of a glycolysis-related lncRNA prognostic signature for clear cell renal cell carcinoma
    Ma, Wei
    Zhong, Manli
    Liu, Xiaowu
    BIOSCIENCE REPORTS, 2021, 41 (08)
  • [37] Rhomboid-like 2 correlated with TME infiltration inhibits cuproptosis-related genes and drives malignant phenotype in clear cell renal cell carcinoma
    Zhifei Che
    Wenyi Jin
    Yaoxi Wu
    Haoyong Li
    Peiyu Liang
    Scientific Reports, 14 (1)
  • [38] Development and validation of a novel 5 cuproptosis-related long noncoding RNA signature to predict diagnosis, prognosis, and drug therapy in clear cell renal cell carcinoma
    Chen, Yongquan
    Hu, Weijing
    Wei, Xin
    Zhang, Lin
    Shao, Yuan
    Tian, Jinming
    Wang, Dongwen
    Wu, Bo
    TRANSLATIONAL ANDROLOGY AND UROLOGY, 2023, 12 (04) : 622 - +
  • [39] Identification and Validation of Cuproptosis-Related LncRNA Signatures in the Prognosis and Immunotherapy of Clear Cell Renal Cell Carcinoma Using Machine Learning
    Bai, Zhixun
    Lu, Jing
    Chen, Anjian
    Zheng, Xiang
    Wu, Mingsong
    Tan, Zhouke
    Xie, Jian
    BIOMOLECULES, 2022, 12 (12)
  • [40] Construction of cuproptosis signature based on bioinformatics and experimental validation in clear cell renal cell carcinoma
    Xi Tian
    Shuxuan Zhu
    Wangrui Liu
    Xinrui Wu
    Gaomeng Wei
    Ji Zhang
    Aihetaimujiang Anwaier
    Cong chen
    Shiqi Ye
    Xiangxian Che
    Wenhao Xu
    Yuanyuan Qu
    Hailiang Zhang
    Dingwei Ye
    Journal of Cancer Research and Clinical Oncology, 2023, 149 : 17451 - 17466