Automatic estimation of heading date of paddy rice using deep learning

被引:73
|
作者
Desai, Sai Vikas [1 ]
Balasubramanian, Vineeth N. [1 ]
Fukatsu, Tokihiro [3 ,4 ]
Ninomiya, Seishi [2 ]
Guo, Wei [2 ]
机构
[1] Indian Inst Technol Hyderabad, Dept Comp Sci & Engn, Hyderabad 502285, India
[2] Univ Tokyo, Grad Sch Agr & Life Sci, Int Field Phen Res Lab, Tokyo 1880002, Japan
[3] Natl Agr & Food Res Org, Inst Agr Machinery, 1-31-1 Kannondai, Tsukuba, Ibaraki 3050856, Japan
[4] Univ Tsukuba, Grad Sch Life & Environm Sci, 1-1-1 Ten Noudai, Tsukuba, Ibaraki 3058572, Japan
基金
日本科学技术振兴机构;
关键词
Heading date; Panicle detection; Convolutional neural networks; Sliding window; TIME;
D O I
10.1186/s13007-019-0457-1
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
BackgroundAccurate estimation of heading date of paddy rice greatly helps the breeders to understand the adaptability of different crop varieties in a given location. The heading date also plays a vital role in determining grain yield for research experiments. Visual examination of the crop is laborious and time consuming. Therefore, quick and precise estimation of heading date of paddy rice is highly essential.ResultsIn this work, we propose a simple pipeline to detect regions containing flowering panicles from ground level RGB images of paddy rice. Given a fixed region size for an image, the number of regions containing flowering panicles is directly proportional to the number of flowering panicles present. Consequently, we use the flowering panicle region counts to estimate the heading date of the crop. The method is based on image classification using Convolutional Neural Networks. We evaluated the performance of our algorithm on five time series image sequences of three different varieties of rice crops. When compared to the previous work on this dataset, the accuracy and general versatility of the method has been improved and heading date has been estimated with a mean absolute error of less than 1day.ConclusionAn efficient heading date estimation method has been described for rice crops using time series RGB images of crop under natural field conditions. This study demonstrated that our method can reliably be used as a replacement of manual observation to detect the heading date of rice crops.
引用
收藏
页数:11
相关论文
共 50 条
  • [41] Genes of the RAV Family Control Heading Date and Carpel Development in Rice
    Osnato, Michela
    Matias-Hernandez, Luis
    Elizabeth Aguilar-Jaramillo, Andrea
    Kater, Martin M.
    Pelaz, Soraya
    PLANT PHYSIOLOGY, 2020, 183 (04) : 1663 - 1680
  • [42] A transposon-derived gene family regulates heading date in rice
    Fan, Fengfeng
    Cheng, Mingxing
    Yuan, Huanran
    Li, Nannan
    Liu, Manman
    Cai, Meng
    Luo, Xiong
    Ahmad, Ayaz
    Li, Nengwu
    Li, Shaoqing
    PLANT SCIENCE, 2023, 337
  • [43] Identification and Fine Mapping of Heading Date Related Mutant Gene in Rice
    SHANG Hai-xuan
    YE Sheng-hai
    DENG Xiao-mei
    ZHOU Ya
    XIU Fen-lian
    JI Xian-jun
    LIU Ji-yun
    CHEN Ping-ping
    JIN Qing-sheng
    ZHANG Xiao-ming
    Rice Science, 2012, 19 (04) : 269 - 276
  • [44] QTLs for heading date and plant height under multiple environments in rice
    Han, Zhongmin
    Hu, Wei
    Tan, Cong
    Xing, Yongzhong
    GENETICA, 2017, 145 (01) : 67 - 77
  • [45] QTLs for heading date and plant height under multiple environments in rice
    Zhongmin Han
    Wei Hu
    Cong Tan
    Yongzhong Xing
    Genetica, 2017, 145 : 67 - 77
  • [46] Identification and Fine Mapping of Heading Date Related Mutant Gene in Rice
    SHANG Haixuan
    YE Shenghai
    DENG Xiaomei
    ZHOU Ya
    XIU Fenlian
    JI Xianjun
    LIU Jiyun
    CHEN Pingping
    JIN Qingsheng
    ZHANG Xiaoming
    Rice Science, 2012, (04) : 269 - 276
  • [47] Genetic Analysis of Heading Date of Japonica Rice Cultivars in Southwest China
    ZHOU Zhen-ling1
    2Lianyungang Academy of Agricultural Sciences
    3Institute of Crop Sciences
    # These authors contributed equally to this paper)
    Rice Science, 2011, (04) : 287 - 296
  • [48] Genetic architecture of variation in heading date among Asian rice accessions
    Kiyosumi Hori
    Yasunori Nonoue
    Nozomi Ono
    Taeko Shibaya
    Kaworu Ebana
    Kazuki Matsubara
    Eri Ogiso-Tanaka
    Takanari Tanabata
    Kazuhiko Sugimoto
    Fumio Taguchi-Shiobara
    Jun-ichi Yonemaru
    Ritsuko Mizobuchi
    Yusaku Uga
    Atsunori Fukuda
    Tadamasa Ueda
    Shin-ichi Yamamoto
    Utako Yamanouchi
    Toshiyuki Takai
    Takashi Ikka
    Katsuhiko Kondo
    Tomoki Hoshino
    Eiji Yamamoto
    Shunsuke Adachi
    Hideki Nagasaki
    Ayahiko Shomura
    Takehiko Shimizu
    Izumi Kono
    Sachie Ito
    Tatsumi Mizubayashi
    Noriyuki Kitazawa
    Kazufumi Nagata
    Tsuyu Ando
    Shuichi Fukuoka
    Toshio Yamamoto
    Masahiro Yano
    BMC Plant Biology, 15
  • [49] Natural Variation of OsHd8 Regulates Heading Date in Rice
    Yuan, Huanran
    Wang, Ruihua
    Cheng, Mingxing
    Wei, Xiao
    Wang, Wei
    Fan, Fengfeng
    Zhang, Licheng
    Wang, Zhikai
    Tian, Zhihong
    Li, Shaoqing
    AGRONOMY-BASEL, 2022, 12 (10):
  • [50] Photoperiod and temperature synergistically regulate heading date and regional adaptation in rice
    Zong, Wubei
    Guo, Xiaotong
    Zhang, Kai
    Chen, Letian
    Liu, Yao-guang
    Guo, Jingxin
    JOURNAL OF EXPERIMENTAL BOTANY, 2024,