Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties

被引：0
|
作者：
Zainal-Abidin, Rabiatul-Adawiah [1 ,2 ]
Zainal, Zamri [2 ,3 ]
Mohamed-Hussein, Zeti-Azura [2 ,3 ]
Sew, Yun Shin [1 ]
Simoh, Sanimah [1 ]
Ab Razak, Shahril [1 ]
Abu-Bakar, Norliza [1 ]
机构：
[1] Malaysian Agr Res & Dev Inst MARDI, Biotechnol & Nanotechnol Res Ctr, Serdang 43400, Selangor, Malaysia
[2] Univ Kebangsaan Malaysia, Inst Syst Biol INBIOSIS, Ukm Bangi 43600, Selangor, Malaysia
[3] Univ Kebangsaan Malaysia, Fac Sci & Technol, Ctr Frontier Sci, Ukm Bangi 43600, Selangor, Malaysia
来源：
DATA IN BRIEF | 2020年 / 31卷
关键词：
Genome; HiSeq; Nutritional; Pigmented rice; Single nucleotide polymorphism (SNP);
D O I：
10.1016/j.dib.2020.105806
中图分类号：
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
The genomics and genetic data of pigmented and nonpigmented Malaysian rice varieties are still limited. Hence, we performed the genome resequencing of two black rice varieties (Bali, Pulut Hitam 9), two red rice varieties (MRM16, MRQ100) and two white rice varieties (MR297 and MRQ76) using Illumina HiSeq 40 0 0 platform with 30x sequencing coverage. We aimed to identify and annotate single nucleotide polymorphisms (SNPs) from the genome of these four pigmented and two non-pigmented rice varieties. The potential SNPs will be used in developing the functional SNP markers related to nutritional (i.e. antioxidant, folate, amylose) and quality (i.e. aromatic) traits. Raw data of the pigmented and non-pigmented rice varieties have been deposited into the European Nucleotide Archive (ENA) database with accession number PRJEB29070 and PRJEB32344, respectively. (C) 2020 The Author(s). Published by Elsevier Inc.
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页数：4
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