CDetection: CRISPR-Cas12b-based DNA detection with sub-attomolar sensitivity and single-base specificity

被引:243
|
作者
Teng, Fei [1 ,2 ,3 ]
Guo, Lu [1 ,2 ,3 ]
Cui, Tongtong [1 ,2 ,3 ]
Wang, Xin-Ge [1 ,2 ,3 ]
Xu, Kai [1 ,2 ,3 ]
Gao, Qingqin [1 ,2 ,3 ]
Zhou, Qi [1 ,2 ,3 ]
Li, Wei [1 ,2 ,3 ]
机构
[1] Chinese Acad Sci, State Key Lab Stem Cell & Reprod Biol, Inst Zool, Beijing 100101, Peoples R China
[2] Chinese Acad Sci, Inst Stem Cell & Regenerat, Beijing 100101, Peoples R China
[3] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
基金
中国国家自然科学基金;
关键词
RNA-GUIDED ENDONUCLEASE; NUCLEIC-ACID DETECTION; CPF1; NUCLEASES;
D O I
10.1186/s13059-019-1742-z
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
CRISPR-based nucleic acid detection methods are reported to facilitate rapid and sensitive DNA detection. However, precise DNA detection at the single-base resolution and its wide applications including high-fidelity SNP genotyping remain to be explored. Here we develop a Cas12b-mediated DNA detection (CDetection) strategy, which shows higher sensitivity on examined targets compared with the previously reported Cas12a-based detection platform. Moreover, we show that CDetection can distinguish differences at the single-base level upon combining the optimized tuned guide RNA (tgRNA). Therefore, our findings highlight the high sensitivity and accuracy of CDetection, which provides an efficient and highly practical platform for DNA detection.
引用
收藏
页数:7
相关论文
共 50 条
  • [31] Visual detection of SARS-CoV-2 with a CRISPR/Cas12b-based platform
    Zhang, Yaqin
    Quan, Xiangyu
    Li, Yingchun
    Guo, Hangyu
    Kong, Fange
    Lu, Jiahui
    Teng, Lirong
    Wang, Jiasi
    Wang, Di
    TALANTA, 2023, 253
  • [32] CRISPR-Cas12a Biosensor Array for Ultrasensitive Detection of Unamplified DNA with Single-Nucleotide Polymorphic Discrimination
    Weng, Zhengyan
    You, Zheng
    Li, Huijie
    Wu, Guangfu
    Song, Yang
    Sun, He
    Fradlin, Ava
    Neal-Harris, Camille
    Lin, Mengshi
    Gao, Xue
    Zhang, Yi
    ACS SENSORS, 2023, 8 (04) : 1489 - 1499
  • [33] Evaluation of CRISPR/Cas12a-based DNA detection for fast pathogen diagnosis and GMO test in rice
    Yun-mu Zhang
    Ying Zhang
    Kabin Xie
    Molecular Breeding, 2020, 40
  • [34] A universal electrochemical biosensor based on CRISPR/Cas12a and a DNA tetrahedron for ultrasensitive nucleic acid detection
    Dong, Jiangbo
    Li, Xinyao
    Hu, Wenxi
    Liu, Meilin
    Hou, Changjun
    Hou, Jingzhou
    Yang, Mei
    Huo, Danqun
    CHEMICAL COMMUNICATIONS, 2024, 60 (52) : 6667 - 6670
  • [35] DNA Virus Detection System Based on RPA-CRISPR/ Cas12a-SPM and Deep Learning
    Liu, Changyue
    Lei, Zhengyang
    Lian, Lijin
    Zhang, Likun
    Du, Zhicheng
    Qin, Peiwu
    JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2024, (207):
  • [36] RNA reporter based CRISPR/Cas12a biosensing platform for sensitive detection of circulating tumor DNA
    Deng, Fei
    Li, Yi
    Sang, Rui
    Zhang, Chengchen
    Hall, Tim
    Yang, Danting
    Goldys, Ewa
    2023 45TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE & BIOLOGY SOCIETY, EMBC, 2023,
  • [37] Evaluation of CRISPR/Cas12a-based DNA detection for fast pathogen diagnosis and GMO test in rice
    Zhang, Yun-mu
    Zhang, Ying
    Xie, Kabin
    MOLECULAR BREEDING, 2020, 40 (01)
  • [38] CRISPR/Cas12a Fluorescence Sensor Based on Molecular Beacon for Amplified Detection of Circular Tumor DNA
    Zhang, Han-Xiao
    Dai, Xiao-Chun
    Zhou, Ya-Nan
    Lyu, Xu-Zhen
    Gong, Tao
    Zhao, Xu-Hua
    Yu, Bao-Feng
    CHINESE JOURNAL OF ANALYTICAL CHEMISTRY, 2023, 51 (02) : 184 - 193
  • [39] Click chemistry-based dual nanosystem for microRNA-122 detection with single-base specificity from tumour cells
    Robles-Remacho, Agustin
    Martos-Jamai, Ismael
    Tabraue-Chavez, Mavys
    Aguilar-Gonzalez, Araceli
    Laz-Ruiz, Jose A.
    Cano-Cortes, M. Victoria
    Lopez-Delgado, F. Javier
    Guardia-Monteagudo, Juan J.
    Pernagallo, Salvatore
    Diaz-Mochon, Juan J.
    Sanchez-Martin, Rosario M.
    JOURNAL OF NANOBIOTECHNOLOGY, 2024, 22 (01)
  • [40] A Triple-Mismatch Differentiating assay exploiting activation and trans cleavage of CRISPR-Cas12a for mutation detection with ultra specificity and sensitivity
    Hu, Yibo
    Liao, Yangwei
    Pan, Shutao
    Zhou, Jingcong
    Wan, Changqing
    Huang, Feiyang
    Bai, Yu
    Lin, Chen
    Xia, Qilong
    Liu, Zixi
    Gong, Jun
    Nie, Xiaoqi
    Wang, Min
    Qin, Renyi
    BIOSENSORS & BIOELECTRONICS, 2025, 267