The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China

被引：1

作者：

Wen, Zhenying ^{[1
]}

Zeng, Sijin ^{[2
,3
,4
]}

Li, Tingzhang ^{[2
,3
]}

Zhang, Guoqiang ^{[2
,3
]}

Peng, Donghui ^{[1
]}

机构：

[1] Fujian Agr & Forestry Univ, Coll Landscape Architecture, 15 Shangxiadian St, Fuzhou 350002, Fujian, Peoples R China

[2] Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen, Peoples R China

[3] Orchid Conservat & Res Ctr Shenzhen, Shenzhen, Peoples R China

[4] South China Agr Univ, Coll Forestry & Landscape Architecture, South China Limestone Plants Res Ctr, Guangzhou, Guangdong, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

关键词：

Cyphotheca montana; Melastomataceae; chloroplast genome; Illumina sequencing; phylogenetic analysis;

D O I：

10.1080/23802359.2019.1627932

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Cyphotheca, a shrub narrowly endemic to Yunnan, southwest China, is a monotypic genus of Sonerileae in Melastomataceae. The species, Cyphotheca montana, is dwindling and is listed as 'Near Threatened (NT)' by IUCN Red List of China. Herein, we report the complete chloroplast genome (cpDNA) sequence assembled from Illumina pair-end sequencing data. The complete chloroplast genome was 156,424 bp in length, which includes two inverted repeat regions (IRs) of 26,776 bp each, which were separated by a large single copy region (LSC) 85,900 bp and a small single copy region (SSC) 16,972 bp. The chloroplast genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content in the chloroplast genome of C. montana was 37.0%. The phylogenomic analysis showed that C. montana is sister to Barthea barthei.

引用

页码：2295 / 2296

页数：2

共 50 条

[1] THE MONOTYPIC GENUS CYPHOTHECA (MELASTOMATACEAE)
HANSEN, C
NORDIC JOURNAL OF BOTANY, 1990, 10 (01) : 21 - 23
[2] The complete chloroplast genome sequence of Barthea barthei (Melastomataceae), a shrub endemic to southern China
He, Xuejiao
Zhou, Yubing
Cai, Yacheng
Chen, Zhendong
Wu, Wei
Zhou, Renchao
Ng, Wei Lun
MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02): : 810 - 811
[3] The complete chloroplast genome of Dunnia sinensis (Rubiaceae): a monotypic species endemic to Guangdong, China
Zhang, Ying
Chen, Sheng
Xu, Xianyi
Wang, Ruijiang
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 814 - 816
[4] The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae)
Wen, Zhen Ying
Zeng, Si Jin
Han, Wenchao
Chen, Bin
Peng, Dong Hui
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3854 - 3855
[5] The complete chloroplast genome sequence of Melastoma candidum (Melastomataceae)
Ng, Wei Lun
Cai, Yacheng
Wu, Wei
Zhou, Renchao
MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (01): : 242 - 243
[6] The complete chloroplast genome of Foonchewia coriacea (Rubioideae: Rubiaceae): a monotypic species endemic to Guangdong, China
Zhang, Ying
Chen, Sheng
Xu, Xianyi
Wang, Ruijiang
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (01): : 156 - 157
[7] The complete chloroplast genome sequence of an endemic monotypic genus Hagenia (Rosaceae): structural comparative analysis, gene content and micro satellite detection
Gichira, Andrew W.
Li, Zhizhong
Saina, Josphat K.
Long, Zhicheng
Hu, Guangwan
Gituru, Robert W.
Wang, Qingfeng
Chen, Jinming
PEERJ, 2017, 5
[8] Complete chloroplast genome sequence of Hanabusaya asiatica (Campanulaceae), an endemic genus to Korea
Cheon, Kyeong-Sik
Yoo, Ki-Oug
MITOCHONDRIAL DNA PART A, 2016, 27 (03) : 1629 - 1631
[9] The complete chloroplast genome sequence of Sapindus delavayi, a species endemic to China
Wang, Xuyang
Wang, Lianchun
Liu, Huimin
Wang, Dawei
Li, Qing
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (07): : 1906 - 1908
[10] The complete chloroplast genome sequence of Calanthe delavayi (Orchidaceae), an endemic to China
Chen, Yan-Qiong
Lan, Si-Ren
Liu, Zhong-Jian
Zhai, Jun-Wen
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1562 - 1563

← 1 2 3 4 5 →