An accurate and efficient procedure of fitting electric field potential by point charges for QM/MM calculations

被引:0
|
作者
Makhov, D. V. [1 ]
Stuchebrukhov, Alexei A. [1 ]
机构
[1] Univ Calif Davis, Dept Chem, Davis, CA 95616 USA
来源
关键词
D O I
10.1002/pssb.200666811
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
An accurate and efficient computational procedure of fitting an electric field potential given on the grid in a finite QM cavity of arbitrary shape by point charges is described. The charges are located on the surface of the sphere that encloses the QM cavity, and also inside the sphere, but outside the QM cavity. The procedure is based on the use of spherical harmonics and singular value decomposition. An example of application of the procedure in QM/MM calculations of pKa values in proteins is discussed. (c) 2006 WILEY-VCH Vertag GmbH & Co. KGaA, Weinheim.
引用
收藏
页码:2030 / 2037
页数:8
相关论文
共 50 条
  • [21] The electric field in systems of regularly arranged point charges.
    Madelung, E
    PHYSIKALISCHE ZEITSCHRIFT, 1918, 19 : 524 - 533
  • [22] Towards accurate ab initio QM/MM calculations of free-energy profiles of enzymatic reactions
    Rosta, E
    Klähn, M
    Warshel, A
    JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (06): : 2934 - 2941
  • [23] Accurate QM/MM free energy calculations of enzyme reactions:: Methylation by catechol O-methyltransferase
    Rod, TH
    Ryde, U
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2005, 1 (06) : 1240 - 1251
  • [24] Free energy perturbation calculations with combined QM/MM Potentials complications, simplifications, and applications to redox potential calculations
    Li, GH
    Zhang, XD
    Cui, Q
    JOURNAL OF PHYSICAL CHEMISTRY B, 2003, 107 (33): : 8643 - 8653
  • [25] PHYS 255-Efficient exploration of QM:MM potential energy surfaces
    Hratchian, Hrant P.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2009, 237
  • [26] Ab initio quantum mechanical charge field (QMCF) molecular dynamics: a QM/MM-MD procedure for accurate simulations of ions and complexes
    Rode, BM
    Hofer, TS
    Randolf, BR
    Schwenk, CF
    Xenides, D
    Vchirawongkwin, V
    THEORETICAL CHEMISTRY ACCOUNTS, 2006, 115 (2-3) : 77 - 85
  • [27] Electric potential of point charges distributions: on the convergence criteria of infinite series
    Macedo, Diego Ximenes
    Guedes, Ilde
    REVISTA BRASILEIRA DE ENSINO DE FISICA, 2010, 32 (03):
  • [28] ARRANGEMENTS OF POINT CHARGES HAVING ZERO ELECTRIC-FIELD GRADIENT
    KNOP, O
    PALMER, EM
    ROBINSON, RW
    ACTA CRYSTALLOGRAPHICA SECTION A, 1975, A 31 (JAN1): : 19 - 31
  • [29] Electronic coupling calculations with transition charges, dipoles, and quadrupoles derived from electrostatic potential fitting
    Fujimoto, Kazuhiro J.
    JOURNAL OF CHEMICAL PHYSICS, 2014, 141 (21):
  • [30] Exploring complex system potential energy surfaces using efficient QM:MM methods
    Hratchian, Hrant P.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2009, 238