Nearest neighbor parameters for 7-deaza-adenosine•uridine pairs in RNA duplexes

被引:0
|
作者
Richardson, Katherine [1 ]
Znosko, Brent [1 ]
机构
[1] St Louis Univ, Chem, St Louis, MO 63103 USA
关键词
D O I
暂无
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
179
引用
收藏
页数:1
相关论文
共 43 条
  • [31] Syntheses and fluorescence of RNA conjugates having pyrene-modified adenosine and nitrobenzene-modified uridine base pairs
    Fukuda, Minoru
    Nakamura, Mitsunobu
    Takada, Tadao
    Yamana, Kazushige
    TETRAHEDRON LETTERS, 2010, 51 (13) : 1732 - 1735
  • [32] 5-aza-7-deaza-2′-deoxyguanosine:: Oligonucleotide duplexes with novel base pairs, parallel chain orientation and protonation sites in the core of a double helix
    Seela, F
    Melenewski, A
    EUROPEAN JOURNAL OF ORGANIC CHEMISTRY, 1999, 1999 (02) : 485 - 496
  • [33] In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells
    Sieg, Jacob P.
    Jolley, Elizabeth A.
    Huot, Melanie J.
    Babitzke, Paul
    Bevilacqua, Philip C.
    NUCLEIC ACIDS RESEARCH, 2023, 51 (20) : 11298 - 11317
  • [34] A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N6-Methyladenosine
    Szabat, Marta
    Prochota, Martina
    Kierzek, Ryszard
    Kierzek, Elzbieta
    Mathews, David H.
    JOURNAL OF MOLECULAR BIOLOGY, 2022, 434 (18)
  • [35] Nearest neighbor parameters for Watson-Crick complementary heteroduplexes formed between 2′-O-methyl RNA and RNA oligonucleotides
    Kierzek, Elzbieta
    Mathews, David H.
    Ciesielska, Anna
    Turner, Douglas H.
    Kierzek, Ryszard
    NUCLEIC ACIDS RESEARCH, 2006, 34 (13) : 3609 - 3614
  • [36] Revision of AMBER Torsional Parameters for RNA Improves Free Energy Predictions for Tetramer Duplexes with GC and iGiC Base Pairs
    Yildirim, Ilyas
    Kennedy, Scott D.
    Stern, Harry A.
    Hart, James M.
    Kierzek, Ryszard
    Turner, Douglas H.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (01) : 172 - 181
  • [37] PURINE PURINE MISMATCHES IN RNA HELICES - EVIDENCE FOR PROTONATED G-CENTER-DOT-A PAIRS AND NEXT-NEAREST-NEIGHBOR EFFECTS
    MORSE, SE
    DRAPER, DE
    NUCLEIC ACIDS RESEARCH, 1995, 23 (02) : 302 - 306
  • [38] Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions
    Ghosh, Saptarshi
    Takahashi, Shuntaro
    Banerjee, Dipanwita
    Ohyama, Tatsuya
    Endoh, Tamaki
    Tateishi-Karimata, Hisae
    Sugimoto, Naoki
    NUCLEIC ACIDS RESEARCH, 2023, 51 (09) : 4101 - 4111
  • [39] Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loops
    Mathews, DH
    Turner, DH
    BIOCHEMISTRY, 2002, 41 (03) : 869 - 880
  • [40] Biochemical characterization of the inhibition of the dengue virus RNA polymerase by beta-D-2′-ethynyl-7-deaza-adenosine triphosphate
    Latour, Derek R.
    Jekle, Andreas
    Javanbakht, Hassan
    Henningsen, Robert
    Gee, Peter
    Lee, Ina
    Tran, Patricia
    Ren, Suping
    Kutach, Alan K.
    Harris, Seth F.
    Wang, Sandra M.
    Lok, Stephen J.
    Shaw, David
    Li, Jim
    Heilek, Gabrielle
    Klumpp, Klaus
    Swinney, David C.
    Deval, Jerome
    ANTIVIRAL RESEARCH, 2010, 87 (02) : 213 - 222