The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance

被引:145
|
作者
Gifford, Robert J. [1 ]
Liu, Tommy F. [1 ]
Rhee, Soo-Yon [1 ]
Kiuchi, Mark [1 ]
Hue, Stephane [2 ]
Pillay, Deenan [2 ,3 ]
Shafer, Robert W. [1 ]
机构
[1] Stanford Univ, Dept Med, Div Infect Dis, Stanford, CA 94305 USA
[2] UCL, Dept Infect, London WC1E 6BT, England
[3] Hlth Protect Agcy, Ctr Infect, Colindale, England
关键词
REVERSE-TRANSCRIPTASE; EPIDEMIOLOGIC SURVEILLANCE; ANTIRETROVIRAL TREATMENT; SEQUENCE; TRANSMISSION; MUTATIONS; PROTEASE; EUROPE;
D O I
10.1093/bioinformatics/btp134
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The calibrated population resistance (CPR) tool is a web-accessible program for performing standardized genotypic estimation of transmitted HIV-1 drug resistance. The program is linked to the Stanford HIV drug resistance database and can additionally perform viral genotyping and algorithmic estimation of resistance to specific antiretroviral drugs.
引用
收藏
页码:1197 / 1198
页数:2
相关论文
共 50 条
  • [21] Evidence of a decline in transmitted HIV-1 drug resistance in the United Kingdom
    Burns, Sheila
    Cameron, Sheila
    Cane, Patricia
    Down, Porton
    Chrystie, Ian
    Churchill, Duncan
    Delpech, Valerie
    Pillay, Deenan
    Dunn, David
    Fearnhill, Esther
    Green, Hannah
    Porter, Kholoud
    Easterbrook, Philippa
    Zuckerman, Mark
    Geretti, Anna Maria
    Gifford, Rob
    Kellam, Paul
    Pillay, Deenan
    Phillips, Andrew
    Sabin, Caroline
    Goldberg, David
    Gompels, Mark
    Hale, Antony
    Kaye, Steve
    Leigh-Brown, Andrew
    Orkin, Chloe
    Pozniak, Anton
    Robb, Gerry
    Smit, Erasmus
    Tilston, Peter
    Williams, Ian
    Ainsworth, Jonathan
    Anderson, Jane
    Babiker, Abdel
    Delpech, Valerie
    Dunn, David
    Easterbrook, Philippa
    Fisher, Martin
    Gazzard, Brian
    Gilson, Richard
    Gompels, Mark
    Hill, Teresa
    Johnson, Margaret
    Leen, Clifford
    Orkin, Chloe
    Phillips, Andrew
    Pillay, Deenan
    Porter, Kholoud
    Sabin, Caroline
    Sadiq, Tariq
    AIDS, 2007, 21 (08) : 1035 - 1039
  • [22] HIV-1 subtype diversity, transmitted drug resistance and phylogenetics in Australia
    Pinto, Angie N.
    Hawke, Karen
    Castley, Allison
    Chibo, Doris
    Di Giallonardo, Francesca
    Cooper, Craig
    Sawleshwarkar, Shailendra
    Kelleher, Anthony
    Dwyer, Dominic E.
    FUTURE VIROLOGY, 2018, 13 (08) : 575 - 584
  • [23] Trends in transmitted drug resistance to HIV-1 in the UK since 2010
    Tostevin, A.
    White, E.
    Croxford, S.
    Delpech, V.
    Williams, I.
    HIV MEDICINE, 2015, 16 : 6 - 6
  • [24] Dynamics of Transmitted HIV-1 Drug Resistance - The San Francisco Model
    Abecasis, Ana B.
    Mueller, Viktor
    AIDS REVIEWS, 2010, 12 (02) : 122 - 123
  • [25] Prevalence and Virologic Consequences of Transmitted HIV-1 Drug Resistance in Uganda
    Lee, Guinevere Q.
    Bangsberg, David R.
    Muzoora, Conrad
    Boum, Yap
    Oyugi, Jessica H.
    Emenyonu, Nneka
    Bennett, John
    Hunt, Peter W.
    Knapp, David
    Brumme, Chanson J.
    Harrigan, P. Richard
    Martin, Jeffrey N.
    AIDS RESEARCH AND HUMAN RETROVIRUSES, 2014, 30 (09) : 896 - 906
  • [26] Clinical utility of HIV-1 genotypic drug resistance testing in a heterogeneous, non-trial population
    Coughlan, S
    Clarke, S
    Conroy, A
    Mulcahy, F
    Hall, WW
    Bergin, C
    AIDS, 2000, 14 : S116 - S117
  • [27] HIV-1 drug resistance and resistance testing
    Clutter, Dana S.
    Jordan, Michael R.
    Bertagnolio, Silvia
    Shafer, Robert W.
    INFECTION GENETICS AND EVOLUTION, 2016, 46 : 292 - 307
  • [28] Drug resistance in HIV-1
    Kuritzkes, Daniel R.
    CURRENT OPINION IN VIROLOGY, 2011, 1 (06) : 582 - 589
  • [29] Variability in the interpretation of transmitted genotypic HIV-1 drug resistance and prediction of virological outcomes of the initial HAART by distinct systems
    De Luca, A
    Cozzi-Lepri, A
    Perno, CF
    Balotta, C
    Di Giambenedetto, S
    Poggio, A
    Pagano, G
    Tositti, G
    Piscopo, R
    Del Forno, A
    Chiodo, F
    Magnanio, G
    Monforte, AD
    ANTIVIRAL THERAPY, 2004, 9 (05) : 743 - 752
  • [30] Plasma separation cards are suitable for HIV-1 genotypic drug resistance testing
    Reddy, H.
    Liao, Y. X.
    Hans, L.
    Noble, L.
    Scott, L.
    Stevens, W.
    Steegen, K.
    JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, 2021, 24 : 24 - 25