CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms

被引:68
|
作者
Shapiro, Rebecca S. [1 ,2 ,3 ]
Chavez, Alejandro [4 ]
Collins, James J. [1 ,2 ,5 ]
机构
[1] MIT, Dept Biol Engn, Inst Med Engn & Sci, Synthet Biol Ctr, 77 Massachusetts Ave, Cambridge, MA 02139 USA
[2] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA
[3] Univ Guelph, Dept Mol & Cellular Biol, Guelph, ON, Canada
[4] Columbia Univ Coll Phys & Surg, Dept Pathol & Cell Biol, 630 W 168th St, New York, NY 10032 USA
[5] Harvard Univ, Wyss Inst Biol Inspired Engn, Boston, MA 02115 USA
关键词
HOMOLOGOUS RECOMBINATION; FUNCTIONAL GENOMICS; RNA INTERFERENCE; GENE REPLACEMENT; PLASMODIUM; DNA; TOXOPLASMA; YEAST; ACHIEVEMENTS; DETERMINANTS;
D O I
10.1038/s41579-018-0002-7
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Genetic manipulation of microorganisms has been crucial in understanding their biology, yet for many microbial species, robust tools for comprehensive genetic analysis were lacking until the advent of CRISPR-Cas-based gene editing techniques. In this Progress article, we discuss advances in CRISPR-based techniques for the genetic analysis of genetically intractable microorganisms, with an emphasis on mycobacteria, fungi and parasites. We discuss how CRISPR-based analyses in these organisms have enabled the discovery of novel gene functions, the investigation of genetic interaction networks and the identification of virulence factors.
引用
收藏
页码:333 / 339
页数:7
相关论文
共 50 条
  • [21] CRISPR-based diagnostics
    Hannah Stower
    Nature Medicine, 2018, 24 : 702 - 702
  • [22] Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium
    Pan, Meichen
    Morovic, Wesley
    Hidalgo-Cantabrana, Claudio
    Roberts, Avery
    Walden, Kimberly K. O.
    Goh, Yong Jun
    Barrangou, Rodolphe
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 119 (30)
  • [23] CRISPR-based diagnostics
    Stower, Hannah
    NATURE MEDICINE, 2018, 24 (06) : 702 - 702
  • [24] CRISPR-based diagnostics
    Kaminski, Michael M.
    Abudayyeh, Omar O.
    Gootenberg, Jonathan S.
    Zhang, Feng
    Collins, James J.
    NATURE BIOMEDICAL ENGINEERING, 2021, 5 (07) : 643 - 656
  • [25] CRISPR-based diagnostics
    Michael M. Kaminski
    Omar O. Abudayyeh
    Jonathan S. Gootenberg
    Feng Zhang
    James J. Collins
    Nature Biomedical Engineering, 2021, 5 : 643 - 656
  • [26] Gene Modulation with CRISPR-based Tools in Human iPSC-Cardiomyocytes
    Julie Leann Han
    Emilia Entcheva
    Stem Cell Reviews and Reports, 2023, 19 : 886 - 905
  • [27] Tracking the progeny of bacterial persisters using a CRISPR-based genomic recorder
    Rycroft, Julian Anthony
    Giorgio, Rachel Teresa
    Sargen, Molly
    Helaine, Sophie
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2024, 121 (42)
  • [28] CRISPR-based gene editing in plants: Focus on reagents and their delivery tools
    Ebrahimi, Vida
    Hashemi, Atieh
    BIOIMPACTS, 2025, 15
  • [29] CRISPR-based tools: Alternative methods for the diagnosis of COVID-19
    Palaz, Fahreddin
    Kalkan, Ali Kerem
    Tozluyurt, Abdullah
    Ozsoz, Mehmet
    CLINICAL BIOCHEMISTRY, 2021, 89 : 1 - 13
  • [30] Next-generation CRISPR-based diagnostic tools for human diseases
    Wang, Ting
    Wang Ziwei
    Bai Linlin
    Zhang Xingcai
    Feng, Jia
    Qian, Cheng
    Wang Yongming
    Wang, Rui
    TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2023, 168