M-regression, false discovery rates and outlier detection with application to genetic association studies

被引:11
|
作者
Lourenco, V. M. [1 ,2 ]
Pires, A. M. [3 ,4 ]
机构
[1] Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Math, P-2829516 Caparica, Portugal
[2] Univ Nova Lisboa, Fac Ciencias & Tecnol, CMA, P-2829516 Caparica, Portugal
[3] Univ Tecn Lisboa, Dept Math, P-1049001 Lisbon, Portugal
[4] Univ Tecn Lisboa, CEMAT, P-1049001 Lisbon, Portugal
关键词
Robust regression; Robust outlier test; False discovery rate; Genetic association studies; Single nucleotide polymorphism; ROBUST ESTIMATION; IDENTIFICATION;
D O I
10.1016/j.csda.2014.03.019
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Robust multiple linear regression methods are valuable tools when underlying classical assumptions are not completely fulfilled. In this setting, robust methods ensure that the analysis is not significantly disturbed by any outlying observation. However, knowledge of these observations may be important to assess the underlying mechanisms of the data. Therefore, a robust outlier test is discussed, together with an adequate false discovery rate correction measure, to be used in the context of multiple linear regression with categorical explanatory variables. The methodology focuses on genetic association studies of quantitative traits, though it has much broader applications. The method is also compared to a benchmark rule from the literature and its good performance is validated by a simulation study and a real data example from a candidate gene study. (C) 2014 Elsevier B.V. All rights reserved.
引用
收藏
页码:33 / 42
页数:10
相关论文
共 50 条
  • [1] Outlier detection and false discovery rates for whole-genome association studies.
    Tzeng, JY
    Devlin, B
    Roeder, KM
    Wasserman, L
    AMERICAN JOURNAL OF HUMAN GENETICS, 2001, 69 (04) : 515 - 515
  • [2] Outlier detection for batch processes based on partial robust M-regression
    Jia, R.-D. (jiarunda@ise.neu.edu.cn), 1600, Northeast University (34):
  • [3] Outlier detection and false discovery rates for whole-genome DNA matching
    Tzeng, JY
    Byerley, W
    Devlin, B
    Roeder, K
    Wasserman, L
    JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2003, 98 (461) : 236 - 246
  • [4] A simple diagnostic plot connecting robust estimation, outlier detection, and false discovery rates
    Rice, Kenneth
    Spiegelhalter, David
    JOURNAL OF APPLIED STATISTICS, 2006, 33 (10) : 1131 - 1147
  • [5] Cellwise outlier detection with false discovery rate control
    Liu, Yanhong
    Ren, Haojie
    Guo, Xu
    Zhou, Qin
    Zou, Changliang
    CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE, 2022, 50 (03): : 951 - 971
  • [6] The use of two stage sampling and false discovery rates in genetic association studies: Genetic susceptibility to coronary artery calcium
    Hokanson, JE
    Kinney, GL
    Snell-Bergeon, JK
    Eckel, RH
    Ehrlich, J
    Rewers, M
    CIRCULATION, 2005, 111 (14) : E226 - E226
  • [7] The Application of Regression Diagnosis in Outlier Detection
    Chen, Mingming
    Gao, Meng
    Ma, Jinglian
    PROCEEDINGS OF THE 2015 INTERNATIONAL CONFERENCE ON MANAGEMENT SCIENCE AND INNOVATIVE EDUCATION (MSIE 2015), 2015, 32 : 124 - 127
  • [8] Marginal false discovery rates for penalized regression models
    Breheny, Patrick J.
    BIOSTATISTICS, 2019, 20 (02) : 299 - 314
  • [9] False Discovery Versus Familywise Error Rate Approaches to Outlier Detection
    Xu, Yihuan
    Iglewicz, Boris
    STATISTICS IN BIOPHARMACEUTICAL RESEARCH, 2016, 8 (02): : 143 - 150
  • [10] False Discovery Rate Regression: An Application to Neural Synchrony Detection in Primary Visual Cortex
    Scott, James G.
    Kelly, Ryan C.
    Smith, Matthew A.
    Zhou, Pengcheng
    Kass, Robert E.
    JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2015, 110 (510) : 459 - 471