The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold

被引:360
|
作者
Bycroft, M [1 ]
Hubbard, TJP [1 ]
Proctor, M [1 ]
Freund, SMV [1 ]
Murzin, AG [1 ]
机构
[1] UNIV CAMBRIDGE, CTR MRC, CAMBRIDGE CB2 2QH, ENGLAND
基金
英国医学研究理事会;
关键词
D O I
10.1016/S0092-8674(00)81844-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The S1 domain, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the E. coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site. The structure of the S1 domain is very similar to that of cold shock protein, suggesting that they are both derived from an ancient nucleic acid-binding protein. Enhanced sequence searches reveal hitherto unidentified S1 domains in RNase E, RNase II, NusA, EMB-5, and other proteins.
引用
收藏
页码:235 / 242
页数:8
相关论文
共 50 条
  • [1] A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicases
    Morozov, V
    Mushegian, AR
    Koonin, EV
    Bork, P
    TRENDS IN BIOCHEMICAL SCIENCES, 1997, 22 (11) : 417 - 418
  • [2] Structures and nucleic acid-binding preferences of the eukaryotic ARID domain
    Korn, Sophie Marianne
    Schlundt, Andreas
    BIOLOGICAL CHEMISTRY, 2022, 403 (8-9) : 731 - 747
  • [3] Annotating nucleic acid-binding function based on protein structure
    Stawiski, EW
    Gregoret, LM
    Mandel-Gutfreund, Y
    JOURNAL OF MOLECULAR BIOLOGY, 2003, 326 (04) : 1065 - 1079
  • [4] A structure-specific nucleic acid-binding domain conserved among DNA repair proteins
    Mason, Aaron C.
    Rambo, Robert P.
    Greer, Briana
    Pritchett, Michael
    Tainer, John A.
    Cortez, David
    Eichman, Brandt F.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (21) : 7618 - 7623
  • [5] Structure of mitochondrial transcription termination factor 3 reveals a novel nucleic acid-binding domain
    Spahr, Henrik
    Samuelsson, Tore
    Hallberg, B. Martin
    Gustafsson, Ches M.
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2010, 397 (03) : 386 - 390
  • [6] Cooperative binding to nucleic acids by barley yellow mosaic bymovirus coat protein and characterization of a nucleic acid-binding domain
    Reichel, C
    Maas, C
    Schulze, S
    Schell, J
    Steinbiss, HH
    JOURNAL OF GENERAL VIROLOGY, 1996, 77 : 587 - 592
  • [7] Crystal structure of the hinge domain of Smchd1 reveals its dimerization mode and nucleic acid-binding residues
    Chen, Kelan
    Birkinshaw, Richard W.
    Gurzau, Alexandra D.
    Wanigasuriya, Iromi
    Wang, Ruoyun
    Iminitoff, Megan
    Sandow, Jarrod J.
    Young, Samuel N.
    Hennessy, Patrick J.
    Willson, Tracy A.
    Heckmann, Denise A.
    Webb, Andrew, I
    Blewitt, Marnie E.
    Czabotar, Peter E.
    Murphy, James M.
    SCIENCE SIGNALING, 2020, 13 (636)
  • [8] PURA, the gene encoding Pur-alpha, member of an ancient nucleic acid-binding protein family with mammalian neurological functions
    Daniel, Dianne C.
    Johnson, Edward M.
    GENE, 2018, 643 : 133 - 143
  • [9] NUCLEAR-LOCALIZATION SIGNALS OVERLAP DNA-BINDING OR RNA-BINDING DOMAINS IN NUCLEIC ACID-BINDING PROTEINS
    LACASSE, EC
    LEFEBVRE, YA
    NUCLEIC ACIDS RESEARCH, 1995, 23 (10) : 1647 - 1656
  • [10] NUCLEIC-ACID HELIX-UNWINDING PROPERTIES OF RIBOSOMAL-PROTEIN S1 AND ROLE OF S1 IN MESSENGER-RNA BINDING TO RIBOSOMES
    KOLB, A
    HERMOSO, JM
    THOMAS, JO
    SZER, W
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1977, 74 (06) : 2379 - 2383