Ab-Initio Molecular Dynamics Simulation of the Electrolysis of Nucleobases

被引:2
|
作者
Frank, Irmgard [1 ]
Nadimi, Ebrahim [1 ,2 ]
机构
[1] Leibniz Univ Hannover, Theoret Chem, Callinstr 3A, D-30167 Hannover, Germany
[2] KN Toosi Univ Technol, Fac Elect Engn, POB 16315-1355, Tehran 1996715433, Iran
关键词
Car-Parrinello molecular dynamics; electrochemistry; reaction intermediates; reaction mechanisms; ELECTROCHEMICAL REDUCTION; POLAROGRAPHY; EXCHANGE;
D O I
10.3390/en14165021
中图分类号
TE [石油、天然气工业]; TK [能源与动力工程];
学科分类号
0807 ; 0820 ;
摘要
Electrolysis is potentially a valuable tool for cleansing waste water. One might even hope that it is possible to synthesize valuable products in this way. The question is how the reaction conditions can be chosen to obtain desired compounds. In the present study we use Car-Parrinello molecular dynamics to simulate the reaction of nucleobases under electrolytic conditions. We use our own scheme (F. Hofbauer, I. Frank, Chem. Eur. J., 18, 277, 2012) for simulating the conditions after the electron transfer in a self-consistent field calculation. This scheme was employed previously to the electrolysis of pure water and of polluted solutions. On the picosecond timescale, we find a strongly different reaction behavior for each of the four nucleobases contained in DNA.
引用
收藏
页数:11
相关论文
共 50 条
  • [21] Determining the structure of compressed calcium in phase V by the ab-initio molecular dynamics simulation
    Ishikawa, T.
    Ichikawa, A.
    Nagara, H.
    Kusakabe, K.
    Suzuki, N.
    JOINT 21ST AIRAPT AND 45TH EHPRG INTERNATIONAL CONFERENCE ON HIGH PRESSURE SCIENCE AND TECHNOLOGY, 2008, 121
  • [22] AB-INITIO MOLECULAR-DYNAMICS STUDY OF ANTIMONY CLUSTERS
    SUNDARARAJAN, V
    KUMAR, V
    JOURNAL OF CHEMICAL PHYSICS, 1995, 102 (24): : 9631 - 9637
  • [23] AB-INITIO MOLECULAR-DYNAMICS SIMULATIONS OF HCL IN WATER
    LAASONEN, K
    KLEIN, ML
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1995, 210 : 115 - PHYS
  • [24] Ab-initio molecular dynamics study of lanthanides in liquid sodium
    Li, Xiang
    Samin, Adib
    Zhang, Jinsuo
    Unal, C.
    Mariani, R. D.
    JOURNAL OF NUCLEAR MATERIALS, 2017, 484 : 98 - 102
  • [25] Ab-initio molecular dynamics simulations of hydrous silicate systems
    Pöhlmann, M
    Meyer, A
    Benoit, M
    Kob, W
    HIGH PERFORMANCE COMPUTING IN SCIENCE AND ENGINEERING, MUNICH 2003, 2004, : 199 - 209
  • [26] AB-INITIO MOLECULAR-DYNAMICS WITH AN ORTHONORMALIZED MIXED BASIS
    KISHI, T
    ITOH, S
    JOURNAL OF PHYSICS-CONDENSED MATTER, 1995, 7 (31) : 6197 - 6209
  • [27] AB-INITIO MOLECULAR-DYNAMICS FOR LIQUID-METALS
    KRESSE, G
    JOURNAL OF NON-CRYSTALLINE SOLIDS, 1995, 193 : 222 - 229
  • [29] Ab-initio molecular dynamics simulations of the structure of liquid aluminates
    Cristiglio, V.
    Hennet, L.
    Cuello, G. J.
    Johnson, M. R.
    Fernandez-Martinez, A.
    Fischer, H. E.
    Pozdnyakova, I.
    Zanghi, D.
    Brassamin, S.
    Brun, J.-F.
    Price, D. L.
    JOURNAL OF NON-CRYSTALLINE SOLIDS, 2007, 353 (18-21) : 1789 - 1792
  • [30] OpenAtom: Scalable Ab-Initio Molecular Dynamics with Diverse Capabilities
    Jain, Nikhil
    Bohm, Eric
    Mikida, Eric
    Mandal, Subhasish
    Kim, Minjung
    Jindal, Prateek
    Li, Qi
    Ismail-Beigi, Sohrab
    Martyna, Glenn J.
    Kale, Laxmikant V.
    HIGH PERFORMANCE COMPUTING, 2016, 9697 : 139 - 158