Prediction of the aqueous solvation free energy of organic compounds by using autocorrelation of molecular electrostatic potential surface properties combined with response surface analysis

被引:31
|
作者
Michielan, Lisa [1 ]
Bacilieri, Magdalena [1 ]
Kaseda, Chosei [2 ]
Moro, Stefano [1 ]
机构
[1] Univ Padua, Dipartimento Sci Farmaceut, MMS, I-35131 Padua, Italy
[2] Yamatake Corp, Fujisawa, Kanagawa 2518522, Japan
关键词
quantitative structure-property relationship (QSPR); aqueous solvation free energies; pharmacokinetic profile; molecular surface electrostatic potentials; nonlinear response surface analysis (RSA);
D O I
10.1016/j.bmc.2008.03.064
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Several quantitative structure - property relationship (QSPR) approaches have been explored for the prediction of aqueous solubility or aqueous solvation free energies, Delta G(sol), as crucial parameter affecting the pharmacokinetic pro. le and toxicity of chemical compounds. It is mostly accepted that aqueous solvation free energies can be expressed quantitatively in terms of properties of the molecular surface electrostatic potentials of the solutes. In the present study we have introduced autocorrelation molecular electrostatic potential (autoMEP) vectors in combination with nonlinear response surface analysis (RSA) as alternative 3D-QSPR strategy to evaluate the aqueous solvation free energy of organic compounds. A robust QSPR model (r(cv) = 0.93) has been obtained by using a collection of 248 organic chemicals. An external test set based on 23 molecules confirmed the good predictivity of the autoMEP/RSA model suggesting its further applicability in the in silico prediction of water solubility of large organic compound libraries. (C) 2008 Elsevier Ltd. All rights reserved.
引用
收藏
页码:5733 / 5742
页数:10
相关论文
共 29 条
  • [21] Bifunctionalization of α,β-unsaturated diaryl ketones into α-aryl-,β, β-ditosyloxy ketones: Single crystal XRD, DFT, FMOs, molecular electrostatic potential, hirshfeld surface analysis, and 3D-energy frameworks
    Kumar, Ravinder
    Kamal, Raj
    Kumar, Vipan
    Parkash, Jai
    JOURNAL OF MOLECULAR STRUCTURE, 2022, 1250
  • [22] Selective Removal of Boron from Aqueous Solutions Using ECH@NGM Aerogels with Excellent Hydrophilic and Mechanical Properties: Performance and Response Surface Methodology Analysis
    Pan, Tongtong
    Li, Gan
    Li, Rujie
    Cui, Xiangmei
    Zhang, Weidong
    LANGMUIR, 2022, 38 (48) : 14879 - 14890
  • [23] Analysis and Prediction of Morphology and Properties of Laser-Directed Energy Deposition CoCrFeNi High-Entropy Alloy Using Response Surface Methodology and Non-dominated Sorting Genetic Algorithm II
    Chen, Ying
    Guan, Chuang
    Li, Juncai
    Meng, Fanwei
    Zhang, Chao
    Wang, Xin
    Yu, Tianbiao
    JOURNAL OF MATERIALS ENGINEERING AND PERFORMANCE, 2024,
  • [24] Biodiesel production and exploring properties of Datura stramonium L. oil with its optimization using combined approaches—Taguchi, grey relational analysis, and response surface methodology
    Yashvir Singh
    Nishant Kumar Singh
    Abhishek Sharma
    Pravin P. Patil
    Irfan Anjum Badruddin
    Sarfaraz Kamangar
    Environmental Science and Pollution Research, 2024, 31 : 23802 - 23821
  • [25] Biodiesel production and exploring properties of Datura stramonium L. oil with its optimization using combined approaches-Taguchi, grey relational analysis, and response surface methodology
    Singh, Yashvir
    Singh, Nishant Kumar
    Sharma, Abhishek
    Patil, Pravin P.
    Badruddin, Irfan Anjum
    Kamangar, Sarfaraz
    ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 2024, 31 (16) : 23802 - 23821
  • [26] Prediction of deleterious non-synonymous SNPs of TMPRSS2 protein combined with Molecular Dynamics Simulations and free energy analysis to identify the potential peptide substrates against SARS-CoV-2
    Ramachandran, Balajee
    Nadeem, Ahmed
    Mohanprasanth, Aruchamy
    Saravanan, Muthupandian
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024,
  • [27] Development and test of highly accurate endpoint free energy methods. 3: partition coefficient prediction using a Poisson-Boltzmann method combined with a solvent accessible surface area model for SAMPL challenges
    Niu, Taoyu
    He, Xibing
    Han, Fengyang
    Wang, Luxuan
    Wang, Junmei
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2023, 26 (01) : 85 - 94
  • [28] Establishing the Role of Iridoids as Potential Kirsten Rat Sarcoma Viral Oncogene Homolog G12C Inhibitors Using Molecular Docking; Molecular Docking Simulation; Molecular Mechanics Poisson-Boltzmann Surface Area; Frontier Molecular Orbital Theory; Molecular Electrostatic Potential; and Absorption, Distribution, Metabolism, Excretion, and Toxicity Analysis
    Alamri, Mubarak A.
    Alawam, Abdullah S.
    Alshahrani, Mohammed Merae
    Kawsar, Sarkar M. A.
    Prinsa
    Saha, Supriyo
    MOLECULES, 2023, 28 (13):
  • [29] Calculation of the Transport and Relaxation Properties of the Ar???HCl van der Waals Complex Using a New Potential Energy Surface: Comparison of the Classical and Full Quantum Mechanical Kinetic Theory Results with Molecular Dynamics Simulations
    Sadeghi, Salar
    Nemati-Kande, Ebrahim
    JOURNAL OF PHYSICAL CHEMISTRY A, 2023, 127 (04): : 1053 - 1067