NMR Exchange Format: a unified and open standard for representation of NMR restraint data

被引:36
|
作者
Gutmanas, Aleksandras [1 ]
Adams, Paul D. [2 ]
Bardiaux, Benjamin [3 ,4 ]
Berman, Helen M. [5 ]
Case, David A. [5 ]
Fogh, Rasmus H. [6 ]
Guentert, Peter [7 ,8 ,9 ]
Hendrickx, Pieter M. S. [1 ]
Herrmann, Torsten [10 ,11 ]
Kleywegt, Gerard J. [1 ]
Kobayashi, Naohiro [12 ]
Lange, Oliver F. [13 ]
Markley, John L. [14 ]
Montelione, Gaetano T. [15 ,16 ]
Nilges, Michael [3 ,4 ]
Ragan, Timothy J. [6 ]
Schwieters, Charles D. [17 ]
Tejero, Roberto [18 ]
Ulrich, Eldon L. [14 ]
Velankar, Sameer [1 ]
Vranken-, Wim F. [19 ,20 ,21 ]
Wedell, Jonathan R.
Westbrook, John [5 ]
Wishart, David S. [22 ,23 ]
Vuister, Geerten W. [6 ]
机构
[1] European Bioinformat Inst, European Mol Biol Lab, Protein Data Bank Europe, Cambridge, England
[2] Lawrence Berkeley Lab, Phys Biosci Div, Berkeley, CA USA
[3] Inst Pasteur, Unite Bioinformat Struct, Dept Biol Struct & Chim, Paris, France
[4] CNRS, Unite Mixte Rech 3528, Paris, France
[5] Rutgers State Univ, Ctr Integrat Prote Res, Dept Chem & Chem Biol, Piscataway, NJ USA
[6] Univ Leicester, Dept Biochem, Leicester LE1 7RH, Leics, England
[7] Goethe Univ Frankfurt, Frankfurt Inst Adv Studies, Inst Biophys Chem, D-60054 Frankfurt, Germany
[8] Tokyo Metropolitan Univ, Grad Sch Sci & Engn, Tokyo 158, Japan
[9] ETH, Phys Chem, Zurich, Switzerland
[10] Ecole Normale Super Lyon, Ctr Resonance Magnet Nucl Tres Hauts Champs, Villeurbanne, France
[11] CNRS, Unite Mixte Rech 5280, Inst Sci Analyt, Villeurbanne, France
[12] Osaka Univ, Inst Prot Res, Osaka, Japan
[13] Tech Univ Munich, Biomol NMR, Munich Ctr Integrated Prot Sci, Dept Chem, Garching, Germany
[14] Univ Wisconsin, Dept Biochem, Madison, WI 53705 USA
[15] Rutgers State Univ, Dept Mol Biol & Biochem, Ctr Adv Biotechnol & Med, Piscataway, NJ USA
[16] Rutgers State Univ, Robert Wood Johnson Med Sch, Dept Biochem & Mol Biol, Piscataway, NJ 08854 USA
[17] NIH, Div Computat Biosci, Ctr Informat Technol, Bethesda, MD 20892 USA
[18] Univ Valencia, Dept Quim Fis, Valencia, Spain
[19] Vlaams Inst Biotechnol, Struct Biol Res Ctr, Brussels, Belgium
[20] Vrije Univ Brussel, Struct Biol Brussels, Brussels, Belgium
[21] Univ Libre Bruxelles, Vrije Univ Brussel, Interuniv Inst Bioinformat Brussels, Brussels, Belgium
[22] Univ Alberta, Dept Comp Sci, Edmonton, AB, Canada
[23] Univ Alberta, Dept Biol Sci, Edmonton, AB, Canada
基金
英国生物技术与生命科学研究理事会; 英国医学研究理事会; 美国国家科学基金会; 英国惠康基金;
关键词
PROTEIN DATA-BANK; WWPDB; FILE;
D O I
10.1038/nsmb.3041
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:433 / 434
页数:2
相关论文
共 50 条
  • [41] Rapid Determination of Fast Protein Dynamics from NMR Chemical Exchange Saturation Transfer Data
    Gu, Yina
    Hansen, Alexandar L.
    Peng, Yu
    Brueschweiler, Rafael
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2016, 55 (09) : 3117 - 3119
  • [42] Dual processing of two-dimensional exchange data in magic angle spinning NMR of solids
    Tycko, R
    Berger, AE
    JOURNAL OF MAGNETIC RESONANCE, 1999, 141 (01) : 141 - 147
  • [43] Using the Clinical Document Architecture as open data exchange format for interfacing EMRs with clinical decision support systems
    Bilykh, Iryna
    Jahnke, Jens H.
    McCallum, Glen
    Price, Morgan
    19TH IEEE INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS, PROCEEDINGS, 2006, : 855 - +
  • [44] ssNake: A cross-platform open-source NMR data processing and fitting application
    van Meerten, S. G. J.
    Franssen, W. M. J.
    Kentgens, A. P. M.
    JOURNAL OF MAGNETIC RESONANCE, 2019, 301 : 56 - 66
  • [45] Ion influence on surface water dynamics and proton exchange at protein surfaces - A unified model for transverse and longitudinal NMR relaxation dispersion
    Gao, Tadeja
    Korb, Jean-Pierre
    Luksic, Miha
    Meriguet, Guillaume
    Malikova, Natalie
    Rollet, Anne-Laure
    JOURNAL OF MOLECULAR LIQUIDS, 2022, 367
  • [46] The SEDRES project (systems engineering data representation and exchange standardization); producing a STEP-based data exchange standard supporting integrated systems engineering
    Johnson, JFE
    MILITARY AEROSPACE TECHNOLOGIES - FITEC '98, 1998, 1998 (10): : 183 - 192
  • [47] WaterML2.0: development of an open standard for hydrological time-series data exchange
    Taylor, P.
    Cox, S.
    Walker, G.
    Valentine, D.
    Sheahan, P.
    JOURNAL OF HYDROINFORMATICS, 2014, 16 (02) : 425 - 446
  • [48] MetaboLabPy-An Open-Source Software Package for Metabolomics NMR Data Processing and Metabolic Tracer Data Analysis
    Ludwig, Christian
    METABOLITES, 2025, 15 (01)
  • [49] Studying base pair open-close kinetics of tRNALeu by TROSY-based proton exchange NMR spectroscopy
    Hao, Zhan-Xi
    Tan, Min
    Liu, Chang-Dong
    Feng, Rui
    Wang, En-Duo
    Zhu, Guang
    FEBS LETTERS, 2010, 584 (21) : 4449 - 4452
  • [50] A digital platform for automated analysis of 1H NMR data: prototype framework of digital reference standard
    Sunil Babu Paudel
    Joo-Won Nam
    Gonzalo R. Malca Garcia
    Ben Shapiro
    Pekka Laatikainen
    Yang Liu
    AAPS Open, 11 (1)