I. Novel HCV NS5B polymerase inhibitors: Discovery of indole 2-carboxylic acids with C3-heterocycles

被引:46
|
作者
Anilkumar, Gopinadhan N. [1 ]
Lesburg, Charles A. [1 ]
Selyutin, Oleg [1 ]
Rosenblum, Stuart B. [1 ]
Zeng, Qingbei [1 ]
Jiang, Yueheng [1 ]
Chan, Tin-Yau [1 ]
Pu, Haiyan [1 ]
Vaccaro, Henry [1 ]
Wang, Li [1 ]
Bennett, Frank [1 ]
Chen, Kevin X. [1 ]
Duca, Jose [1 ]
Gavalas, Stephen [1 ]
Huang, Yuhua [1 ]
Pinto, Patrick [1 ]
Sannigrahi, Mousumi [1 ]
Velazquez, Francisco [1 ]
Venkatraman, Srikanth [1 ]
Vibulbhan, Bancha [1 ]
Agrawal, Sony [1 ]
Butkiewicz, Nancy [1 ]
Feld, Boris [1 ]
Ferrari, Eric [1 ]
He, Zhiqing [1 ]
Jiang, Chuan-kui [1 ]
Palermo, Robert E. [1 ]
Mcmonagle, Patricia [1 ]
Huang, H. -C. [1 ]
Shih, Neng-Yang [1 ]
Njoroge, George [1 ]
Kozlowski, Joseph A. [1 ]
机构
[1] Merck Res Labs, Kenilworth, NJ 07033 USA
关键词
HCV; NS5B polymerase; HEPATITIS-C VIRUS; DEPENDENT RNA-POLYMERASE; CRYSTAL-STRUCTURE; INFECTION;
D O I
10.1016/j.bmcl.2011.07.021
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
SAR development of indole-based palm site inhibitors of HCV NS5B polymerase exemplified by initial indole lead 1 (NS5B IC(50) = 0.9 mu M, replicon EC(50) > 100 mu M) is described. Structure-based drug design led to the incorporation of novel heterocyclic moieties at the indole C3-position which formed a bidentate interaction with the protein backbone. SAR development resulted in leads 7q (NS5B IC(50) = 0.032 mu M, replicon EC(50) = 1.4 mu M) and 7r (NS5B IC(50) = 0.017 mu M, replicon EC(50) = 0.3 mu M) with improved enzyme and replicon activity. (C) 2011 Elsevier Ltd. All rights reserved.
引用
收藏
页码:5336 / 5341
页数:6
相关论文
共 50 条
  • [21] Structure-Activity Relationship (SAR) Development and Discovery of Potent Indole-Based Inhibitors of the Hepatitis C Virus (HCV) NS5B Polymerase
    Chen, Kevin X.
    Vibulbhan, Bancha
    Yang, Weiying
    Sannigrahi, Mousumi
    Velazquez, Francisco
    Chan, Tin-Yau
    Venkatraman, Srikanth
    Anilkumar, Gopinadhan N.
    Zeng, Qingbei
    Bennet, Frank
    Jiang, Yueheng
    Lesburg, Charles A.
    Duca, Jose
    Pinto, Patrick
    Gayalas, Stephen
    Huang, Yuhua
    Wu, Wanli
    Selyutin, Oleg
    Agrawal, Sony
    Feld, Boris
    Huang, Hsueh-Cheng
    Li, Cheng
    Cheng, Kuo-Chi
    Shih, Neng-Yang
    Kozlowski, Joseph A.
    Rosenblum, Stuart B.
    Njoroge, F. George
    JOURNAL OF MEDICINAL CHEMISTRY, 2012, 55 (02) : 754 - 765
  • [22] 2-(3-Thienyl)-5,6-dihydroxypyrimidine-4-carboxylic acids as inhibitors of HCV NS5B RdRp
    Pacini, Barbara
    Avolio, Salvatore
    Ercolani, Caterina
    Koch, Uwe
    Migliaccio, Giovanni
    Narjes, Frank
    Pacini, Laura
    Tomei, Licia
    Harper, Steven
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2009, 19 (21) : 6245 - 6249
  • [23] 2-Aryl-3-carbonylquinolones: Design, Synthesis and Biological Evaluation of Novel HCV NS5B Polymerase Inhibitors
    Wang Shenfeng
    Lin Jianping
    He Peilan
    Zuo Jianping
    Long Yaqiu
    ACTA CHIMICA SINICA, 2014, 72 (08) : 906 - 913
  • [24] Nucleotide Prodrugs of 2′-Deoxy-2′-spirooxetane Ribonucleosides as Novel Inhibitors of the HCV NS5B Polymerase
    Jonckers, Tim H. M.
    Vandyck, Koen
    Vandekerckhove, Leen
    Hu, Lili
    Tahri, Abdellah
    Van Hoof, Steven
    Lin, Tse-I
    Vijgen, Leen
    Berke, Jan Martin
    Lachau-Durand, Sophie
    Stoops, Bart
    Leclercq, Laurent
    Fanning, Gregory
    Samuelsson, Bertil
    Nilsson, Magnus
    Rosenquist, Asa
    Simmen, Kenny
    Raboisson, Pierre
    JOURNAL OF MEDICINAL CHEMISTRY, 2014, 57 (05) : 1836 - 1844
  • [25] Discovery of novel potent HCV NS5B polymerase non-nucleoside inhibitors bearing a fused benzofuran scaffold
    Zhong, Min
    Peng, Eric
    Huang, Ningwu
    Huang, Qi
    Huq, Anja
    Lau, Meiyen
    Colonno, Richard
    Li, Leping
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2018, 28 (05) : 963 - 968
  • [26] Discovery of proline sulfonamides as potent and selective hepatitis C virus NS5b polymerase inhibitors. Evidence for a new NS5b polymerase binding
    Gopalsamy, Ariamala
    Chopra, Rajiv
    Lim, Kitae
    Ciszewski, Gregory
    Shi, Mengxiao
    Curran, Kevin J.
    Sukits, Steven F.
    Svenson, Kristine
    Bard, Joel
    Ellingboe, John W.
    Agarwal, Atul
    Krishnamurthy, Girija
    Howe, Anita Y. M.
    Orlowski, Mark
    Feld, Boris
    O'Connell, John
    Mansour, Tarek S.
    JOURNAL OF MEDICINAL CHEMISTRY, 2006, 49 (11) : 3052 - 3055
  • [27] The discovery and structure-activity relationships of pyrano[3,4-b]indole based inhibitors of hepatitis C virus NS5B polymerase
    LaPorte, Matthew G.
    Draper, Tandy L.
    Miller, Lori E.
    Blackledge, Charles W.
    Leister, Lara K.
    Amparo, Eugene
    Hussey, Alison R.
    Young, Dorothy C.
    Chunduru, Srinivas K.
    Benetatos, Christopher A.
    Rhodes, Gerry
    Gopalsamy, Ariamala
    Herbertz, Torsten
    Burns, Christopher J.
    Condon, Stephen M.
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2010, 20 (09) : 2968 - 2973
  • [28] Combination of pharmacophore hypothesis and molecular docking to identify novel inhibitors of HCV NS5B polymerase
    Harikishore, Amaravadhi
    Li, Enlin
    Lee, Jia Jun
    Cho, Nam-Joon
    Yoon, Ho Sup
    MOLECULAR DIVERSITY, 2015, 19 (03) : 529 - 539
  • [29] Combination of pharmacophore hypothesis and molecular docking to identify novel inhibitors of HCV NS5B polymerase
    Amaravadhi Harikishore
    Enlin Li
    Jia Jun Lee
    Nam-Joon Cho
    Ho Sup Yoon
    Molecular Diversity, 2015, 19 : 529 - 539
  • [30] Discovery of novel dialkyl substituted thiophene inhibitors of HCV by in silico screening of the NS5B RdRp
    Louise-May, Shirley
    Yang, Wengang
    Nie, Xingtie
    Liu, Dongmei
    Deshpande, Milind S.
    Phadke, Avinash S.
    Huang, Mingjun
    Agarwal, Atul
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2007, 17 (14) : 3905 - 3909