Projection Based Clustering of Gene Expression Data

被引:0
|
作者
Tasoulis, Sotiris K. [1 ]
Plagianakos, Vassilis P. [1 ]
Tasoulis, Dimitris K. [2 ]
机构
[1] Univ Cent Greece, Dept Comp Sci & Biomed Informat, Papassiopoulou 2-4, Lamia 35100, Greece
[2] Imperial Coll London, Dept Mat, London SW7 2AZ, England
关键词
Unsupervised Clustering; Cluster Analysis; Principal Component Analysis; Kernel Density Estimation; Bioinformatics; Gene Expression Analysis; CLASSIFICATION; PREDICTION;
D O I
暂无
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The microarray DNA technologies have given researchers the ability to examine, discover and monitor thousands of genes in a single experiment. Nonetheless, the tremendous amount of data that can be obtained from microarray studies presents a challenge for data analysis, mainly due to the very high data dimensionality. A particular class of clustering algorithms has been very successful in dealing with such data, utilising information driven by the Principal Component Analysis. In this paper, we investigate the application of recently proposed projection based hierarchical clustering algorithms on gene expression microarray data. The algorithms apart from identifying the clusters present in a data set also calculate their number and thus require no special knowledge about the data.
引用
收藏
页码:228 / +
页数:4
相关论文
共 50 条
  • [41] Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
    Huttenhower, Curtis
    Flamholz, Avi I.
    Landis, Jessica N.
    Sahi, Sauhard
    Myers, Chad L.
    Olszewski, Kellen L.
    Hibbs, Matthew A.
    Siemers, Nathan O.
    Troyanskaya, Olga G.
    Coller, Hilary A.
    BMC BIOINFORMATICS, 2007, 8
  • [42] Spatial clustering based gene selection for gene expression analysis in microarray data classification
    Dhas, P. Edwin
    Lalitha, S.
    Govindaraj, Annalakshmi
    Jyoshna, B.
    AUTOMATIKA, 2024, 65 (01) : 152 - 158
  • [43] MODEL-BASED CLUSTERING WITH DATA CORRECTION FOR REMOVING ARTIFACTS IN GENE EXPRESSION DATA
    Young, William Chad
    Raftery, Adrian E.
    Yeung, Ka Yee
    ANNALS OF APPLIED STATISTICS, 2017, 11 (04): : 1998 - 2026
  • [44] Clustering cancer gene expression data by projective clustering ensemble
    Yu, Xianxue
    Yu, Guoxian
    Wang, Jun
    PLOS ONE, 2017, 12 (02):
  • [45] Clustering analysis of gene expression data based on semi-supervised visual clustering algorithm
    Chung, Fu-lai
    Wang, Shitong
    Deng, Zhaohong
    Shu, Chen
    Hu, D.
    SOFT COMPUTING, 2006, 10 (11) : 981 - 993
  • [46] Clustering Analysis of Gene Expression Data based on Semi-supervised Visual Clustering Algorithm
    Fu-lai Chung
    Shitong Wang
    Zhaohong Deng
    Chen Shu
    D. Hu
    Soft Computing, 2006, 10 : 981 - 993
  • [47] Analysis of gene expression data: clustering and beyond
    Zohar Yakhini
    Amir Ben-Dor
    Stuart Kim
    Ron Shamir
    Nature Genetics, 1999, 23 (Suppl 3) : 83 - 83
  • [48] A repulsive clustering algorithm for gene expression data
    Cheng, CS
    Wang, SS
    THIRD IEEE SYMPOSIUM ON BIOINFORMATICS AND BIOENGINEERING - BIBE 2003, PROCEEDINGS, 2003, : 407 - 412
  • [49] Evaluation of clustering algorithms for gene expression data
    Susmita Datta
    Somnath Datta
    BMC Bioinformatics, 7
  • [50] An improved algorithm for clustering gene expression data
    Bandyopadhyay, Sanghamitra
    Mukhopadhyay, Anirban
    Maulik, Ujjwal
    BIOINFORMATICS, 2007, 23 (21) : 2859 - 2865