Projection Based Clustering of Gene Expression Data

被引:0
|
作者
Tasoulis, Sotiris K. [1 ]
Plagianakos, Vassilis P. [1 ]
Tasoulis, Dimitris K. [2 ]
机构
[1] Univ Cent Greece, Dept Comp Sci & Biomed Informat, Papassiopoulou 2-4, Lamia 35100, Greece
[2] Imperial Coll London, Dept Mat, London SW7 2AZ, England
关键词
Unsupervised Clustering; Cluster Analysis; Principal Component Analysis; Kernel Density Estimation; Bioinformatics; Gene Expression Analysis; CLASSIFICATION; PREDICTION;
D O I
暂无
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The microarray DNA technologies have given researchers the ability to examine, discover and monitor thousands of genes in a single experiment. Nonetheless, the tremendous amount of data that can be obtained from microarray studies presents a challenge for data analysis, mainly due to the very high data dimensionality. A particular class of clustering algorithms has been very successful in dealing with such data, utilising information driven by the Principal Component Analysis. In this paper, we investigate the application of recently proposed projection based hierarchical clustering algorithms on gene expression microarray data. The algorithms apart from identifying the clusters present in a data set also calculate their number and thus require no special knowledge about the data.
引用
收藏
页码:228 / +
页数:4
相关论文
共 50 条
  • [1] Problems in gene clustering based on gene expression data
    Bryan, J
    JOURNAL OF MULTIVARIATE ANALYSIS, 2004, 90 (01) : 44 - 66
  • [2] Gene-Ontology-based clustering of gene expression data
    Adryan, B
    Schuh, R
    BIOINFORMATICS, 2004, 20 (16) : 2851 - 2852
  • [3] Fuzzy Rule Based Clustering for Gene Expression Data
    Sinaee, Mehrnoosh
    Mansoori, Eghbal G.
    FOURTH INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEMS, MODELLING AND SIMULATION (ISMS 2013), 2013, : 7 - 11
  • [4] Clustering of Gene Expression Data Based on Shape Similarity
    Hestilow, Travis J.
    Huang, Yufei
    EURASIP JOURNAL ON BIOINFORMATICS AND SYSTEMS BIOLOGY, 2009, (01)
  • [5] DYNAMIC CORE BASED CLUSTERING OF GENE EXPRESSION DATA
    Bocicor, Maria-Iuliana
    Sirbu, Adela
    Czibula, Gabriela
    INTERNATIONAL JOURNAL OF INNOVATIVE COMPUTING INFORMATION AND CONTROL, 2014, 10 (03): : 1051 - 1069
  • [6] Dynamic core based clustering of gene expression data
    1600, ICIC International (10):
  • [7] Biclustering gene expression data by random projection based on bucketing
    Liu, Juan
    Liu, Feng
    2008 INTERNATIONAL SPECIAL TOPIC CONFERENCE ON INFORMATION TECHNOLOGY AND APPLICATIONS IN BIOMEDICINE, VOLS 1 AND 2, 2008, : 322 - 325
  • [8] Model-based clustering and data transformations for gene expression data
    Yeung, KY
    Fraley, C
    Murua, A
    Raftery, AE
    Ruzzo, WL
    BIOINFORMATICS, 2001, 17 (10) : 977 - 987
  • [9] Gene expression data clustering and visualization based on a binary hierarchical clustering framework
    Szeto, LK
    Liew, AWC
    Yan, H
    Tang, SS
    JOURNAL OF VISUAL LANGUAGES AND COMPUTING, 2003, 14 (04): : 341 - 362
  • [10] Gene expression data clustering using a multiobjective symmetry based clustering technique
    Saha, Sriparna
    Ekbal, Asif
    Gupta, Kshitija
    Bandyopadhyay, Sanghamitra
    COMPUTERS IN BIOLOGY AND MEDICINE, 2013, 43 (11) : 1965 - 1977