Meta-optimization of evolutionary strategies for empirical potential development: Application to aqueous silicate systems

被引:6
|
作者
Barnes, Brian C.
Gelb, Lev D. [1 ]
机构
[1] Washington Univ, Dept Chem, St Louis, MO 63130 USA
[2] Washington Univ, Ctr Mat Innovat, St Louis, MO 63130 USA
关键词
D O I
10.1021/ct700087d
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The use of evolutionary strategy optimizations in fitting empirical potentials against first-principles data is considered. Empirical potentials can involve a large number of interdependent quantities, the number varying with the complexity of the potential, and the optimization of these presents a challenging numerical problem. Evolutionary strategies are a general class of optimization methods that mimic natural selection by stochastically evolving a population of trial solutions according to rules that select for high values of some fitness function. In this work we apply a variety of evolutionary optimization methods to a representative "parametrization problem" in order to determine which such methods are well-suited to such applications. Prior work on the design of evolutionary strategies has generally focused on finding the extrema of relatively simple mathematical functions, and the findings of such studies may not be transferable to chemical applications of very high dimensionality. The test problem consists of parametrization of the Feuston-Garofalini all-atom potential developed for simulation of silicic acid oligomerization in aqueous solution (Feuston, B. P.; Garofalini, S. H. J. Phys. Chem. 1990, 94, 5351). "Meta-optimization" of the evolutionary method is first considered by fitting this potential against itself, using a wide variety of population sizes, recombination algorithms, mutation-size control methods, and selection methods. Simulated annealing is also considered as an alternative approach. Optimal choices of population size, recombination operator, mutation size control approach, and selection method are discussed, as well as the quantity of data required for the parametrization. It is clear from comparisons of multiple independent optimizations that, even when fitting this potential against itself, there are a considerable number of local extrema in the fitness function. Evolutionary methods are found to be competitive with simulated annealing and are more easily parallelized. Finally, the potential is reparametrized against reference data taken from a Car-Parrinello Molecular Dynamics trajectory of several relevant silicate species in aqueous solution, again using several variant algorithms.
引用
收藏
页码:1749 / 1764
页数:16
相关论文
共 50 条
  • [31] Development and application of control strategies for signalized intersections in coordinated systems
    Skabardonis, A
    Bertini, RL
    Gallagher, BR
    MANAGING URBAN TRAFFIC SYSTEMS: FREEWAY OPERATIONS, HIGH-OCCUPANCY VEHICLE SYSTEMS, AND TRAFFIC SIGNAL SYSTEMS, 1998, (1634): : 110 - 117
  • [32] Development of a multi-objective optimization evolutionary algorithm based on educational systems
    Hossein Moradi
    Hossein Ebrahimpour-Komleh
    Applied Intelligence, 2018, 48 : 2954 - 2966
  • [33] Development of a multi-objective optimization evolutionary algorithm based on educational systems
    Moradi, Hossein
    Ebrahimpour-Komleh, Hossein
    APPLIED INTELLIGENCE, 2018, 48 (09) : 2954 - 2966
  • [34] Development of integrated evolutionary optimization algorithm and its application to optimum design of ship structures
    Kong, Young-Mo
    Choi, Su-Hyun
    Yang, Bo-Suk
    Choi, Byeong-Keun
    JOURNAL OF MECHANICAL SCIENCE AND TECHNOLOGY, 2008, 22 (07) : 1313 - 1322
  • [35] Development of integrated evolutionary optimization algorithm and its application to optimum design of ship structures
    Young-Mo Kong
    Su-Hyun Choi
    Bo-Suk Yang
    Byeong-Keun Choi
    Journal of Mechanical Science and Technology, 2008, 22 : 1313 - 1322
  • [36] Simulation–Optimization Modeling: A Survey and Potential Application in Reservoir Systems Operation
    Deepti Rani
    Maria Madalena Moreira
    Water Resources Management, 2010, 24 : 1107 - 1138
  • [37] Functionalization of carbon nanomaterials by evolutionary molecular engineering: Potential application in drug delivery systems
    Shiba, Kiyotaka
    JOURNAL OF DRUG TARGETING, 2006, 14 (07) : 512 - 518
  • [38] Application of Optimization to Select Contractors to Develop Strategies and Policies for the Development of Transport Infrastructure
    Wang, Chia-Nan
    Le, Tien-Muoi
    Han-Khanh Nguyen
    MATHEMATICS, 2019, 7 (01):
  • [39] The optimization strategies of LNP-mRNA formulations: Development and challenges for further application
    Wang, Sizhen
    Guo, Beibei
    Wang, Huan
    Yang, Feng
    JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY, 2024, 95
  • [40] Development of a method for making interatomic potential: an application to metallic systems
    Kumagai, T.
    Hara, S.
    Izumi, S.
    Sakai, S.
    THERMEC 2006, PTS 1-5, 2007, 539-543 : 2123 - +