Fitness effects of altering gene expression noise in Saccharomyces cerevisiae

被引:38
|
作者
Duveau, Fabien [1 ,2 ]
Hodgins-Davis, Andrea [1 ]
Metzger, Brian P. H. [1 ,3 ]
Yang, Bing [4 ]
Tryban, Stephen [1 ]
Walker, Elizabeth A. [1 ]
Lybrook, Tricia [1 ]
Wittkopp, Patricia J. [1 ,4 ]
机构
[1] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA
[2] Univ Paris Diderot, CNRS UMR 7057, Lab Matiere & Syst Complexes, Paris, France
[3] Univ Chicago, Dept Ecol & Evolut, 940 E 57Th St, Chicago, IL 60637 USA
[4] Univ Michigan, Dept Mol Cellular & Dev Biol, Ann Arbor, MI 48109 USA
来源
ELIFE | 2018年 / 7卷
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
SINGLE-CELL; TRANSCRIPTIONAL NOISE; BIOLOGICAL NOISE; YEAST; PROMOTER; EVOLUTION; SELECTION; DRIVEN; STOCHASTICITY; CONSTRAINTS;
D O I
10.7554/eLife.37272
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Gene expression noise is an evolvable property of biological systems that describes differences in expression among genetically identical cells in the same environment. Prior work has shown that expression noise is heritable and can be shaped by selection, but the impact of variation in expression noise on organismal fitness has proven difficult to measure. Here, we quantify the fitness effects of altering expression noise for the TDH3 gene in Saccharomyces cerevisiae. We show that increases in expression noise can be deleterious or beneficial depending on the difference between the average expression level of a genotype and the expression level maximizing fitness. We also show that a simple model relating single-cell expression levels to population growth produces patterns consistent with our empirical data. We use this model to explore a broad range of average expression levels and expression noise, providing additional insight into the fitness effects of variation in expression noise.
引用
收藏
页数:33
相关论文
共 50 条
  • [41] Expression of Bacillus sp β-xylosidase gene (xylB) in Saccharomyces cerevisiae
    Kim, JH
    Kim, BW
    Yoon, KH
    Nam, SW
    BIOTECHNOLOGY LETTERS, 2000, 22 (12) : 1025 - 1029
  • [43] Expression of the Trypanosoma brucei phosphoenolpyruvate carboxykinase gene in Saccharomyces cerevisiae
    Yévenes, A
    Cardemil, E
    BIOCHIMIE, 2000, 82 (02) : 123 - 127
  • [44] REGULATION OF SACCHAROMYCES-CEREVISIAE FLAVOHEMOGLOBIN GENE-EXPRESSION
    CRAWFORD, MJ
    SHERMAN, DR
    GOLDBERG, DE
    JOURNAL OF BIOLOGICAL CHEMISTRY, 1995, 270 (12) : 6991 - 6996
  • [45] CONTROL OF MITOCHONDRIAL GENE-EXPRESSION IN SACCHAROMYCES-CEREVISIAE
    COSTANZO, MC
    FOX, TD
    ANNUAL REVIEW OF GENETICS, 1990, 24 : 91 - 113
  • [46] Expression of a Chitinase Gene from Chaetomium Cupreum in Saccharomyces Cerevisiae
    Zhang, Haiyan
    Ji, Hongfang
    Zhang, Lingwen
    2010 3RD INTERNATIONAL CONFERENCE ON BIOMEDICAL ENGINEERING AND INFORMATICS (BMEI 2010), VOLS 1-7, 2010, : 2045 - 2048
  • [47] Expression of the chitinase gene from Trichoderma aureoviride in Saccharomyces cerevisiae
    Song, JZ
    Yang, Q
    Liu, BD
    Chen, DF
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2005, 69 (01) : 39 - 43
  • [48] Expanding the neutral sites for integrated gene expression in Saccharomyces cerevisiae
    Kong, Sijia
    Yu, Wei
    Gao, Ning
    Zhai, Xiaoxin
    Zhou, Yongjin J.
    FEMS MICROBIOLOGY LETTERS, 2022, 369 (01)
  • [49] Cloning of the Aspergillus awamori glucoamylase gene and expression in Saccharomyces cerevisiae
    Wang, YJ
    Liu, HD
    Sun, T
    Zhang, SH
    CHINESE SCIENCE BULLETIN, 1998, 43 (10): : 855 - 859
  • [50] DNA damage-induced gene expression in Saccharomyces cerevisiae
    Fu, Yu
    Pastushok, Landon
    Xiao, Wei
    FEMS MICROBIOLOGY REVIEWS, 2008, 32 (06) : 908 - 926