Aromatic Fragmentation Based on a Ring Overlap Scheme: An Algorithm for Large Polycyclic Aromatic Hydrocarbons Using the Molecules-in-Molecules Fragmentation-Based Method

被引:9
|
作者
Nofike, Benjamin W. [1 ]
Beckett, Daniel [1 ]
Li, Liang-shi [1 ]
Raghavachari, Krishnan [1 ]
机构
[1] Indiana Univ, Dept Chem, Bloomington, IN 47405 USA
基金
美国国家科学基金会;
关键词
VIBRATIONAL CIRCULAR-DICHROISM; AB-INITIO THERMOCHEMISTRY; OPTICAL-ACTIVITY SPECTRA; MANY-BODY EXPANSION; SET MODEL CHEMISTRY; ACCURATE CALCULATIONS; COMPUTATIONAL METHOD; TAILORING APPROACH; ENERGIES; IMPLEMENTATION;
D O I
10.1021/acs.jctc.9b00566
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a novel and systematic fragmentation scheme to treat polycyclic aromatic hydrocarbons (PAHs) built off the molecules-in-molecules composite method. Our algorithm generates a set of biphenyl and naphthalene subsystems overlapping by whole sextet rings, ensuring all calculations are performed on aromatic molecules. Hence, our method is called Aromatic Fragmentation Based on a Ring Overlap Scheme (AroBOROS), and the generated fragments may be combined to form a hierarchy of subsystems to reduce errors for more complex PAHs. Errors are reduced to below chemical accuracy by combining subsystems that reflect the lowest energy structures determined by Clar's rule of aromatic sextets, and this is shown on two diverse test sets of PAHs ranging from 18 to 84 carbon atoms. Additionally, evaluations are performed for larger PAHs, as well as a nanotube fragment, containing up to 132 carbon atoms, and it is shown that good results may be achieved even with fragments representing an appreciably small portion of the full system.
引用
收藏
页码:2160 / 2171
页数:12
相关论文
共 50 条
  • [31] An experimental design based strategy to optimize a capillary electrophoresis method for the separation of 19 polycyclic aromatic hydrocarbons
    Ferey, Ludivine
    Delaunay, Nathalie
    Rutledge, Douglas N.
    Huertas, Alain
    Raoul, Yann
    Gareil, Pierre
    Vial, Jerome
    Rivals, Isabelle
    ANALYTICA CHIMICA ACTA, 2014, 820 : 195 - 204
  • [32] A sensitive and automatic method based on microextraction by packed sorbents for the determination of polycyclic aromatic hydrocarbons in saliva samples
    Martin Santos, Patricia
    Jimenez Carracedo, Camilo
    del Nogal Sanchez, Miguel
    Perez Pavon, Jose Luis
    Moreno Cordero, Bernardo
    MICROCHEMICAL JOURNAL, 2020, 152
  • [33] Non-invasive cancer detection using molecular device based on aromatic molecules
    Kaur, Rupan Preet
    Sawhney, Ravinder Singh
    Engles, Derick
    Kaur, Milanpreet
    ICT EXPRESS, 2016, 2 (04): : 155 - 158
  • [34] Quantitative and qualitative analysis of polycyclic aromatic hydrocarbons in urine samples using a non-separative method based on mass spectrometry
    Martin Santos, Patricia
    del Nogal Sanchez, Miguel
    Perez Pavon, Jose Luis
    Moreno Cordero, Bernardo
    TALANTA, 2018, 181 : 373 - 379
  • [35] Exposure biomarker profiles of polycyclic aromatic hydrocarbons based on a rat model using a versatile analytical framework
    Jia, Xiaoqian
    Long, Manman
    Pang, Yiming
    An, Hang
    Jin, Yu
    Jiang, Jianjun
    Li, Zhiwen
    Wang, Bin
    ENVIRONMENTAL SCIENCE-PROCESSES & IMPACTS, 2024, 26 (08) : 1268 - 1280
  • [36] Removal of Polycyclic Aromatic Hydrocarbons from Water Using Mn(III)-Based Advanced Oxidation Process
    Fang, Jian
    Zhao, Renzun
    Rao, Balaji
    Rakowska, Magdalena
    Athanasiou, Dimitrios
    Millerick, Kayleigh
    Wei, Suying
    Lei, Xiangyang
    Lou, Helen H.
    Reible, Danny D.
    JOURNAL OF ENVIRONMENTAL ENGINEERING, 2021, 147 (03)
  • [37] Structural insights on bioremediation of polycyclic aromatic hydrocarbons using microalgae: a modelling-based computational study
    SureshKumar, Pandian
    Thomas, Jibu
    Poornima, Vasudevan
    ENVIRONMENTAL MONITORING AND ASSESSMENT, 2018, 190 (02)
  • [38] FULLERENE MODEL COMPOUNDS - BOWL-SHAPED AROMATIC-HYDROCARBONS AND CYCLOPHANE-BASED CAGE MOLECULES
    FAUST, R
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION IN ENGLISH, 1995, 34 (13-14): : 1429 - 1432
  • [39] Structural insights on bioremediation of polycyclic aromatic hydrocarbons using microalgae: a modelling-based computational study
    Pandian SureshKumar
    Jibu Thomas
    Vasudevan Poornima
    Environmental Monitoring and Assessment, 2018, 190
  • [40] A STUDY OF QSAR OF NITRATED POLYCYCLIC AROMATIC-HYDROCARBONS USING A KNOWLEDGE-BASED SYSTEM APPROACH
    BAI, NB
    DU, M
    TOXICOLOGICAL AND ENVIRONMENTAL CHEMISTRY, 1994, 42 (1-2): : 1 - 8