The complete plastid genome sequence of Aconitum brachypodum (Ranunculaceae): an Endangered species endemic to China

被引:2
|
作者
Meng, Jing [1 ]
Zhang, Linna [1 ]
Li, Xuepei [1 ]
He, Jun [2 ]
机构
[1] Yunnan Agr Univ, Coll Hort & Landscape, Kunming, Yunnan, Peoples R China
[2] Chinese Acad Sci, Kunming Inst Bot, Kunming 650204, Yunnan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期
基金
中国国家自然科学基金;
关键词
Aconitum brachypodum; plastid genome; endangered species; phylogenetic analysis;
D O I
10.1080/23802359.2018.1540264
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Aconitum brachypodum is an endangered plant endemic to south-west China. The plastid genome of this was characterized by Illumina next-generation sequencing technology. The complete plastid genome is 155,651 bp long with a pair of 26,213 bp inverted repeat regions (IRs) that are separated by a large single copy (LSC) region of 86,292 bp and a small single copy (SSC) region of 16,933 bp. A total of 132 genes were annotated, including 85 protein-coding genes, 37 tRNA genes, eight rRNA genes and two pseudogenes. In addition, five palindromic, five forward, nine tandem repeats and 266 SSRs were detected in A. brachypodum. Furthermore, phylogenetic analysis illustrated that A. brachypodum is closely related to other ten Aconitum subgenus. Aconitum species are with high bootstrap support of 100%.
引用
收藏
页码:130 / 131
页数:2
相关论文
共 50 条
  • [21] The complete chloroplast genome of Lilium taliense, an endangered species endemic to China
    Zhang, Qian
    Bi, Yu
    Zhang, Mingfang
    Chen, Xuqing
    Yang, Fengping
    Xue, Jing
    Du, Yunpeng
    Zhang, Xiuhai
    CONSERVATION GENETICS RESOURCES, 2017, 9 (02) : 201 - 203
  • [22] The complete chloroplast genome of Sauvagesia rhodoleuca, an endangered species endemic to China
    Xie, Xiao
    Huang, Jiashuang
    Zhang, Yonghua
    Zhu, Shanshan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (08): : 2398 - 2399
  • [23] The complete chloroplast genome of Lilium taliense, an endangered species endemic to China
    Qian Zhang
    Yu Bi
    Mingfang Zhang
    Xuqing Chen
    Fengping Yang
    Jing Xue
    Yunpeng Du
    Xiuhai Zhang
    Conservation Genetics Resources, 2017, 9 : 201 - 203
  • [24] The complete chloroplast genome of Calycanthus chinensis, an endangered species endemic to China
    Chen, Xiaodan
    Yang, Jia
    Zhang, Hao
    Bai, Ru
    Zhang, Xiao
    Bai, Guoqing
    Dai, Panfeng
    Zhao, Guifang
    CONSERVATION GENETICS RESOURCES, 2019, 11 (01) : 55 - 58
  • [25] The complete chloroplast genome of Magnolia omeiensis, an endangered and endemic species in China
    Ling, Li-Zhen
    Zhang, Shu-Dong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1909 - 1910
  • [26] The complete chloroplast genome sequence of Annamocarya sinensis (Juglandaceae), an Endangered species endemic to Yunnan Province, China
    Ji, Yuman
    Zhang, Wanjie
    Li, Dan
    Shen, Lixin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2021 - 2023
  • [27] The complete chloroplast genome sequence and phylogenetic position of Aconitum quelpaertense Nakai (Ranunculaceae)
    Kim, Tae-Hee
    Ha, Young-Ho
    Lee, Se Ryeong
    Kim, Sang-Chul
    Lee, Jungsim
    Kim, Dong-Kap
    Kim, Hyuk-Jin
    JOURNAL OF ASIA-PACIFIC BIODIVERSITY, 2023, 16 (02) : 282 - 286
  • [28] Complete chloroplast genome sequence of Stephania kwangsiensis (Menispermaceae), a rare and critically endangered species endemic to China
    Shi, Yancai
    Liu, Bingbing
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 188 - 189
  • [29] The complete chloroplast genome sequence of Poncirus polyandra (Rutaceae), an endangered species endemic to Yunnan Province, China
    Li, Siqi
    Zong, Dan
    Zhou, Anpei
    He, Chengzhong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 766 - 768
  • [30] Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China
    Shi, Yancai
    Liu, Bingbing
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 536 - 537