DNA barcoding of Thais species (Family: Muricidae) from west coast of India

被引:0
|
作者
Kumar, Ravi [1 ]
Jaiswar, A. K. [1 ]
Pavan-Kumar, A. A. [1 ]
Chakraborty, S. K. [1 ]
Jahageerdar, S. [1 ]
Lakra, W. S. [1 ]
机构
[1] Deemed Univ, Cent Inst Fisheries Educ, Bombay 400061, Maharashtra, India
来源
INDIAN JOURNAL OF FISHERIES | 2015年 / 62卷 / 02期
关键词
Cytochrome c oxidase subunit I gene; DNA barcoding; Gastropods; Muricidae; Thais; NEOGASTROPODA; MOLLUSCA; SUBSTITUTION; GASTROPODA; SINGAPORE; DISCOVERY;
D O I
暂无
中图分类号
S9 [水产、渔业];
学科分类号
0908 ;
摘要
Accurate species identification is essential for defining biological entities for sustainable management and conservation. Species identification under the genus Thais (Mollusca: Neogastropoda: Muricidae) based on shell morphology often mystify due to the phenotype plasticity. In this study, efficiency of DNA barcodes (mitochondrial cytochrome c oxidase subunit I gene - COI gene) was tested to discriminate six species of Thais from west coast of India. The COI gene analysis revealed that the average transitional pairs (S-i = 56) were less than transversional pairs (S-v = 59) with an average ratio of 0.93. The mean intraspecific and interspecific distances were 0.09 +/- 0.011 and 0.19 +/- 0.012, respectively. The average between species distance was 2 times more than within species distance. However, the DNA barcodes were not able to discriminate all the species with high barcode gap. Further, intraspecific distance values were estimated by including reported sequences from other geographical locations to test the DNA barcode efficiency in delineating conspecific individuals across different geographical locations.
引用
收藏
页码:92 / 97
页数:6
相关论文
共 50 条
  • [41] Distribution, abundance and species diversity of copepods from dandi creek west coast of India
    Surendra, Kadam S.
    Lalchand, Tiwari R.
    INDIAN JOURNAL OF GEO-MARINE SCIENCES, 2015, 44 (07) : 1096 - 1103
  • [42] Corollospora indica, a new marine fungal species from west coast of India.
    Prasannarai, K
    Ananda, K
    Sridhar, KR
    JOURNAL OF ENVIRONMENTAL BIOLOGY, 2000, 21 (03): : 235 - 239
  • [43] DNA barcoding and elucidation of cryptic aphid species (Hemiptera: Aphididae) in India
    Rebijith, K. B.
    Asokan, R.
    Kumar, N. K. Krishna
    Krishna, V.
    Chaitanya, B. N.
    Ramamurthy, V. V.
    BULLETIN OF ENTOMOLOGICAL RESEARCH, 2013, 103 (05) : 601 - 610
  • [44] DNA barcoding and description of new species of Paradorydium Kirkaldy (Cicadellidae: Deltocephalinae: Eupelicini) from India
    Rajgopal, N. N.
    Stuti
    Meshram, Naresh M.
    Shashank, P. R.
    JOURNAL OF ASIA-PACIFIC ENTOMOLOGY, 2018, 21 (03) : 1059 - 1063
  • [45] Identification of selected earthworm species of Northeast India using DNA barcoding
    Hijam, S. D.
    Thounaojam, R. S.
    Kalita, M. C.
    Talukdar, N. C.
    JOURNAL OF ENVIRONMENTAL BIOLOGY, 2022, 43 (05): : 716 - 721
  • [46] DNA barcoding of green algae Caulerpa species (Caulerpales: Chlorophyta) from Andaman Islands, India
    Karthick, P.
    Murthy, K. N.
    Ramesh, C. H.
    Narayana, S.
    Mohanraju, R.
    GENOME, 2015, 58 (05) : 236 - 236
  • [47] DNA barcoding and morphological analyses reveal a cryptic species of Miniopterus from India and Sri Lanka
    Kusuminda, Tharaka
    Mannakkara, Amani
    Ukuwela, Kanishka D. B.
    Kruskop, Sergei, V
    Amarasinghe, Chamara J.
    Saikia, Uttam
    Venugopal, Parvathy
    Karunarathna, Mathisha
    Gamage, Rajika
    Ruedi, Manuel
    Csorba, Gabor
    Yapa, Wipula B.
    Patterson, Bruce D.
    ACTA CHIROPTEROLOGICA, 2022, 24 (01) : 1 - 17
  • [48] DNA barcoding of selected species of pufferfishes (Order: Tetraodontiformes) of Puducherry coastal waters along south-east coast of India
    Kaleshkumar, K.
    Rajaram, R.
    Vinothkumar, S.
    Ramalingam, V.
    Meetei, Khangembam Brajamani
    INDIAN JOURNAL OF FISHERIES, 2015, 62 (02): : 98 - 103
  • [49] DNA barcoding of marine ornamental fishes from India
    Bamaniya, Dhaval C.
    Pavan-Kumar, A.
    Gireesh-Babu, P.
    Sharma, Niti
    Reang, Dhalongsaih
    Krishna, Gopal
    Lakra, W. S.
    MITOCHONDRIAL DNA PART A, 2016, 27 (05) : 3093 - 3097
  • [50] DNA Barcoding Resolves Taxonomic Ambiguity in Mugilidae of Parangipettai Waters (Southeast Coast of India)
    Rahman, M. Ashiq Ur
    Khan, S. Ajmal
    Lyla, P. S.
    Kumar, C. Prasanna
    TURKISH JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 2013, 13 (02) : 321 - 330