Complete plastid genome of an ecologically important brown alga Sargassum thunbergii (Fucales, Phaeophyceae)

被引:7
|
作者
Yang, Ji Hyun [1 ]
Graf, Louis [1 ]
Cho, Chung Hyun [1 ]
Jeon, Byung Hee [1 ]
Kim, Jeong Ha [1 ]
Yoon, Hwan Su [1 ]
机构
[1] Sungkyunkwan Univ, Dept Biol Sci, Suwon 16419, South Korea
基金
新加坡国家研究基金会;
关键词
Phaeophyceae; Sargassum thunbergii; Plastid genome; Genome comparison; Plastid evolution; RNA GENES; EVOLUTION; SEAWEED;
D O I
10.1016/j.margen.2016.03.003
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The brown algal species Sargassum thunbergii (Fucales, Phaeophyceae) is widely distributed in coastal area of East Asia. This alga is ecologically and economically important seaweeds; however, no genome data was reported thus far. To get a better understanding of organellar genome of S. thunbergii, we sequenced and annotated its complete plastid genome. The circular plastid genome is 124,592 bp in size with 30.4% CC content, which is composed of a large single-copy (LSC) region of 73,668 bp, a small single-copy (SSC) region of 40,032 bp, and two inverted repeat (IR) of 5446 bp each. The plastid genome of S. thunbergii includes 139 protein-coding genes, six ribosomal RNA (rRNA) operons, 28 transfer RNA (tRNA) sequences, and one intron (214 bp) in tRNA-Leu (trnL) gene. Five overlapping genes were identified in the compact plastid genome. Base on the comparison with previously published five brown algae plastid genomes, we found that the gene content and gene order of S. thunbergii are identical to that of other Fucales species Fucus vesiculosus. (C) 2016 Elsevier B.V. All rights reserved.
引用
收藏
页码:17 / 20
页数:4
相关论文
共 50 条
  • [31] De novo transcriptome analysis-gained insights into physiological and metabolic characteristics of Sargassum thunbergii (Fucales, Phaeophyceae)
    Liu, Fuli
    Sun, Xiutao
    Wang, Wenjun
    Liang, Zhourui
    Wang, Feijiu
    JOURNAL OF APPLIED PHYCOLOGY, 2014, 26 (03) : 1519 - 1526
  • [32] Plastid Genome of Dictyopteris divaricata (Dictyotales, Phaeophyceae): Understanding the Evolution of Plastid Genomes in Brown Algae
    Feng Liu
    Zhe Jin
    Yu Wang
    Yuping Bi
    James T. Melton
    Marine Biotechnology, 2017, 19 : 627 - 637
  • [33] The complete mitochondrial genome of Sargassum siliquastrum (Phaeophyceae) and its phylogenetic analysis
    Li, Jingjing
    Li, Huan
    Bi, Yuanxin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 3583 - 3584
  • [34] Plastid Genome of Dictyopteris divaricata (Dictyotales, Phaeophyceae): Understanding the Evolution of Plastid Genomes in Brown Algae
    Liu, Feng
    Jin, Zhe
    Wang, Yu
    Bi, Yuping
    Melton, James T., III
    MARINE BIOTECHNOLOGY, 2017, 19 (06) : 627 - 637
  • [35] LIGHT-INDEPENDENT PLASTID DIFFERENTIATION IN THE BROWN ALGA LAMINARIA-SACCHARINA (PHAEOPHYCEAE)
    GREVBY, C
    AXELSSON, L
    SUNDQVIST, C
    PHYCOLOGIA, 1989, 28 (03) : 375 - 384
  • [36] Metabolic profile of the brown macroalga Sargassum cymosum (Phaeophyceae, Fucales) under laboratory UV radiation and salinity conditions
    Luz K. Polo
    Marthiellen R. L. Felix
    Marianne Kreusch
    Debora T. Pereira
    Giulia B. Costa
    Carmen Simioni
    Roberta de Paula Martins
    Alexandra Latini
    Eny S. I. Floh
    Fungyi Chow
    Fernanda Ramlov
    Marcelo Maraschin
    Zenilda L. Bouzon
    Éder C. Schmidt
    Journal of Applied Phycology, 2015, 27 : 887 - 899
  • [37] A NOVEL, TRIMETHYLATED ARSENO-SUGAR ISOLATED FROM THE BROWN ALGA SARGASSUM-THUNBERGII
    SHIBATA, Y
    MORITA, M
    AGRICULTURAL AND BIOLOGICAL CHEMISTRY, 1988, 52 (04): : 1087 - 1089
  • [38] Effect of brefeldin A and the dynamics of the actin plate on cytokinesis of zygotes in the brown alga, Silvetia babingtonii (Fucales, Phaeophyceae)
    Nagasato, Chikako
    Motomura, Taizo
    EUROPEAN JOURNAL OF PHYCOLOGY, 2019, 54 (01) : 26 - 38
  • [39] Metabolic profile of the brown macroalga Sargassum cymosum (Phaeophyceae, Fucales) under laboratory UV radiation and salinity conditions
    Polo, Luz K.
    Felix, Marthiellen R. L.
    Kreusch, Marianne
    Pereira, Debora T.
    Costa, Giulia B.
    Simioni, Carmen
    Martins, Roberta de Paula
    Latini, Alexandra
    Floh, Eny S. I.
    Chow, Fungyi
    Ramlov, Fernanda
    Maraschin, Marcelo
    Bouzon, Zenilda L.
    Schmidt, Eder C.
    JOURNAL OF APPLIED PHYCOLOGY, 2015, 27 (02) : 887 - 899
  • [40] Influence of centriole behavior on the first spindle formation in zygotes of the brown alga Fucus distichus (Fucales, Phaeophyceae)
    Nagasato, C
    Motomura, T
    Ichimura, T
    DEVELOPMENTAL BIOLOGY, 1999, 208 (01) : 200 - 209