The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera)

被引:22
|
作者
Pasha, Shaik Naseer [1 ]
Shafi, K. Mohamed [1 ,2 ]
Joshi, Adwait G. [1 ]
Meenakshi, Iyer [1 ]
Harini, K. [1 ]
Mahita, Jarjapu [1 ]
Sajeevan, Radha Sivarajan [1 ]
Karpe, Snehal D. [1 ]
Ghosh, Pritha [1 ]
Nitish, Sathyanarayanan [1 ,2 ]
Gandhimathi, A. [1 ]
Mathew, Oommen K. [1 ]
Prasanna, Subramanian Hari [1 ]
Malini, Manoharan [1 ]
Mutt, Eshita [1 ]
Naika, Mahantesha [1 ]
Ravooru, Nithin [1 ]
Rao, Rajas M. [1 ]
Shingate, Prashant N. [1 ]
Sukhwal, Anshul [1 ]
Sunitha, Margaret S. [1 ]
Upadhyay, Atul K. [1 ]
Vinekar, Rithvik S. [1 ]
Sowdhamini, Ramanathan [1 ]
机构
[1] Natl Ctr Biol Sci, TIFR, GKVK Campus, Bangalore 560065, Karnataka, India
[2] Univ Transdisciplinary Hlth Sci & Technol TDU, Bangalore 560064, Karnataka, India
关键词
Plant transcriptome; Functional annotation; Differential expression; Metabolic pathway analysis; BIOSYNTHESIS; PROTEIN; PIPELINE; SYNTHASE; DATABASE; VERSION; GENOME;
D O I
10.1016/j.ygeno.2019.04.014
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Moringa oleifera is a plant well-known for its nutrition value, drought resistance and medicinal properties. cDNA libraries from five different tissues (leaf, root, stem, seed and flower) of M. oleifera cultivar Bhagya were generated and sequenced. We developed a bioinformatics pipeline to assemble transcriptome, along with the previously published M. oleifera genome, to predict 17,148 gene models. Few candidate genes related to biosynthesis of secondary metabolites, vitamins and ion transporters were identified. Expressions were further confirmed by real-time quantitative PCR experiments for few promising leads. Quantitative estimation of metabolites, as well as elemental analysis, was also carried out to support our observations. Enzymes in the biosynthesis of vitamins and metabolites like quercetin and kaempferol are highly expressed in leaves, flowers and seeds. The expression of iron transporters and calcium storage proteins were observed in root and leaves. In general, leaves retain the highest amount of small molecules of interest.
引用
收藏
页码:621 / 628
页数:8
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