Seven quick tips for beginners in protein crystallography

被引:0
|
作者
Kurpiewska, Katarzyna [1 ]
Kot, Ewa [2 ]
Borowski, Tomasz [2 ]
机构
[1] Jagiellonian Univ, Fac Chem, Dept Crystal Chem & Crystal Phys, Krakow, Poland
[2] Polish Acad Sci, Jerzy Haber Inst Catalysis & Surface Chem, Krakow, Poland
关键词
determination; bioinformatic tools; database; CRYSTAL-STRUCTURE DETERMINATION; WEB SERVER; DENSITY MODIFICATION; DATA-COLLECTION; MODEL; PROGRAM; TOOL; CRYSTALLIZATION; OPTIMIZATION; SYSTEM;
D O I
10.18388/abp.2020_5589
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The aim of this brief review is to provide a roadmap for beginning crystallographers who have little or no experience in structural biology and yet are keen to produce protein crystals and analyze their 3D structures to understand their biological roles. To achieve this goal it is crucial to perform crystallization, structure determination, visualization and analysis of the protein's structural features related to its biological function. Keeping that objective in mind, tips presented herein cover the most important steps in a crystallographic endeavor and present a selection of databases and software which can aid and accelerate the whole process. We hope that this short overview will help novices coming from different disciplines to navigate a protein crystallography project and, hopefully, allow avoiding some costly mistakes, even though being a crystallographer means learning by trial and error.
引用
收藏
页码:535 / 546
页数:12
相关论文
共 50 条
  • [41] Quick Tips for Getting Back to Peak Productivity
    Bhargava, Puneet
    CURRENT PROBLEMS IN DIAGNOSTIC RADIOLOGY, 2016, 45 (06) : 355 - 355
  • [42] Five quick tips for becoming a better manager
    Bates, GD
    JOURNAL OF MANAGEMENT IN ENGINEERING, 1996, 12 (04) : 5 - 5
  • [43] Eleven quick tips for writing a Bioconductor package
    Soneson, Charlotte
    Shepherd, Lori
    Ramos, Marcel
    Rue-Albrecht, Kevin
    Rainer, Johannes
    Pages, Herve
    Carey, Vincent J.
    PLOS COMPUTATIONAL BIOLOGY, 2025, 21 (03)
  • [44] QUICK TIPS FOR SIMPLIFYING METAL HARDNESS TESTING
    BORGERSON, RD
    METAL STAMPING, 1978, 12 (05): : 22 - 22
  • [45] The New Radiology Resident: Quick Tips for Success
    Patel, Kirang
    Patel, Amy
    JOURNAL OF THE AMERICAN COLLEGE OF RADIOLOGY, 2021, 18 (12) : 1666 - 1667
  • [46] Ten quick tips for making things findable
    Lin, Sarah
    Ali, Ibraheem
    Wilson, Greg
    PLOS COMPUTATIONAL BIOLOGY, 2020, 16 (12)
  • [47] Nine quick tips for analyzing network data
    Miele, Vincent
    Matias, Catherine
    Robin, Stephane
    Dray, Stephane
    PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (12)
  • [48] PROTEIN CRYSTALLOGRAPHY
    SCHOENBORN, BP
    BIOPHYSICAL JOURNAL, 1983, 41 (02) : A375 - A375
  • [49] PROTEIN CRYSTALLOGRAPHY
    Rossmann, Michael G.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 1996, 52 : C570 - C570
  • [50] Nine quick tips for pathway enrichment analysis
    Chicco, Davide
    Agapito, Giuseppe
    PLOS COMPUTATIONAL BIOLOGY, 2022, 18 (08)