Anisakis pegreffii;
Zoonotic parasite;
Transcriptome;
De novo assembly;
Gene annotation;
D O I:
10.1186/s13104-022-06099-9
中图分类号:
Q [生物科学];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
Objectives Anisakis pegreffii is a zoonotic parasite requiring marine organisms to complete its life-history. Human infection (anisakiasis) occurs when the third stage larvae (L3) are accidentally ingested with raw or undercooked infected fish or squids. A new de novo transcriptome of A. pegreffii was here generated aiming to provide a robust bulk of data to be used for a comprehensive "ready-to-use" resource for detecting functional studies on genes and gene products of A. pegreffii involved in the molecular mechanisms of parasite-host interaction. Data description A RNA-seq library of A. pegreffii L3 was here newly generated by using Illumina TruSeq platform. It was combined with other five RNA-seq datasets previously gathered from L3 of the same species stored in SRA of NCBI. The final dataset was analyzed by launching three assembler programs and two validation tools. The use of a robust pipeline produced a high-confidence protein-coding transcriptome of A. pegreffii. These data represent a more robust and complete transcriptome of this species with respect to the actually existing resources. This is of importance for understanding the involved adaptive and immunomodulatory genes implicated in the "cross talk" between the parasite and its hosts, including the accidental one (humans).
机构:
Gangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South KoreaGangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South Korea
Kim, Jeong-Ho
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机构:
Kim, Jong-Oh
Jeon, Chan-Hyeok
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机构:
Gangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South Korea
Korea Fisheries Resources Agcy, East Sea Life Resources Ctr, Uljin 36340, South KoreaGangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South Korea
Jeon, Chan-Hyeok
Nam, U-Hwa
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Gangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South KoreaGangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South Korea
Nam, U-Hwa
Subramaniyam, Sathiyamoorthy
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Theragen Etex Inc, Theragen ETEX Bio Inst, Suwon 16229, South KoreaGangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South Korea
Subramaniyam, Sathiyamoorthy
Yoo, Seung-Il
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Theragen Etex Inc, Theragen ETEX Bio Inst, Suwon 16229, South KoreaGangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South Korea
Yoo, Seung-Il
Park, Jun-Hyung
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Theragen Etex Inc, Theragen ETEX Bio Inst, Suwon 16229, South Korea
3Bigs, Hwaseong 18454, South KoreaGangneung Wonju Natl Univ, Dept Marine Biosci, Kangnung 25457, Gangwon, South Korea
机构:Sun Yat Sen Univ, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China
Lyu, Haomin
Li, Xinnian
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机构:Sun Yat Sen Univ, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China
Li, Xinnian
Guo, Zixiao
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机构:Sun Yat Sen Univ, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China
Guo, Zixiao
He, Ziwen
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Sun Yat Sen Univ, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R ChinaSun Yat Sen Univ, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China
He, Ziwen
Shi, Suhua
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机构:Sun Yat Sen Univ, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China