A transcriptome-wide association study identifies novel blood-based gene biomarker candidates for Alzheimer's disease risk

被引:11
|
作者
Sun, Yanfa [1 ,2 ,3 ,4 ]
Zhou, Dan [5 ,6 ]
Rahman, Md Rezanur [7 ]
Zhu, Jingjing [2 ]
Ghoneim, Dalia [2 ]
Cox, Nancy J. [5 ,6 ]
Beach, Thomas G. [8 ]
Wu, Chong [9 ]
Gamazon, Eric R. [5 ,6 ,10 ,11 ]
Wu, Lang [2 ]
机构
[1] Longyan Univ, Coll Life Sci, Dept Anim Sci & Vet Med, Longyan 364012, Fujian, Peoples R China
[2] Univ Hawaii Manoa, Univ Hawaii Canc Ctr, Canc Epidemiol Div, Populat Sci Pacific Program, Honolulu, HI 96813 USA
[3] Fujian Prov Key Lab Prevent & Control Anim Infect, Longyan 364012, Fujian, Peoples R China
[4] Longyan Univ, Fujian Prov Univ Key Lab Prevent Vet Med & Biotec, Longyan 364012, Fujian, Peoples R China
[5] Vanderbilt Univ, Vanderbilt Genet Inst, Med Ctr, Nashville, TN 37232 USA
[6] Vanderbilt Univ, Dept Med, Div Genet Med, Med Ctr, Nashville, TN 37232 USA
[7] Univ Queensland, Queensland Brain Inst, Brisbane, Qld 4072, Australia
[8] Banner Sun Hlth Res Inst, Sun City, AZ 85351 USA
[9] Florida State Univ, Dept Stat, Tallahassee, FL 32306 USA
[10] Univ Cambridge, Clare Hall, Cambridge CB3 9AL, England
[11] Univ Cambridge, Sch Clin Med, MRC Epidemiol Unit, Cambridge CB2 0SL, England
基金
美国国家卫生研究院;
关键词
EXPRESSION; VARIANTS; PLASMA; METAANALYSIS; A-BETA-42; PROFILES; LOCI; BETA; TAU;
D O I
10.1093/hmg/ddab229
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Alzheimer's disease (ad) adversely affects the health, quality of life and independence of patients. There is a critical need to identify novel blood gene biomarkers for ad risk assessment. We performed a transcriptome-wide association study to identify biomarker candidates for ad risk. We leveraged two sets of gene expression prediction models of blood developed using different reference panels and modeling strategies. By applying the prediction models to a meta-GWAS including 71 880 (proxy) cases and 383 378 (proxy) controls, we identified significant associations of genetically determined expression of 108 genes in blood with ad risk. Of these, 15 genes were differentially expressed between ad patients and controls with concordant directions in measured expression data. With evidence from the analyses based on both genetic instruments and directly measured expression levels, this study identifies 15 genes with strong support as biomarkers in blood for ad risk, which may enhance ad risk assessment and mechanism-focused studies.
引用
收藏
页码:289 / 299
页数:11
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