Genome-Wide Association Studies of Soybean Seed Hardness in the Chinese Mini Core Collection

被引：9

作者：

Zhang, Xing ^{[1
]}

Zhao, Jinming ^{[1
]}

Bu, Yuanpeng ^{[1
]}

Xue, Dong ^{[1
]}

Liu, Zhangxiong ^{[2
]}

Li, Xiangnan ^{[1
]}

Huang, Jing ^{[1
]}

Guo, Na ^{[1
]}

Wang, Haitang ^{[1
]}

Xing, Han ^{[1
]}

Qiu, Lijuan ^{[2
]}

机构：

[1] Nanjing Agr Univ, Natl Ctr Soybean Improvement, Key Lab Biol & Genet & Breeding Soybean, Minist Agr,Natl Key Lab Crop Genet & Germplasm En, Nanjing 210095, Jiangsu, Peoples R China

[2] Chinese Acad Agr Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Key Lab Germplasm Utilizat MOA, Inst Crop Sci, Beijing 100081, Peoples R China

来源：

PLANT MOLECULAR BIOLOGY REPORTER | 2018年 / 36卷 / 04期

基金：

中国国家自然科学基金;

关键词：

Soybean mini core collection; Soybean seed hardness; Seed oil content; GWAS; MAX L. MERR; GLYCINE-MAX; PECTIN METHYLESTERASE; PHYTOPHTHORA-SOJAE; AGRONOMIC TRAITS; LINKAGE DISEQUILIBRIUM; GENETIC DISSECTION; WATER-ABSORPTION; QUALITY TRAITS; TOMATO FRUIT;

D O I：

10.1007/s11105-018-1102-2

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Soybean seed hardness is an important quality character in soybean food processing. Both vegetable soybean and natto require soft seeds to achieve a desirable sensory experience and for effective processing. In this study, we used a texture analyzer to measure the seed hardness of Chinese mini core collection via two indexes over 4years and found significant correlations among the seed hardness, seed oil content, and germplasm eco-region. Based on 1514 SNPs, genome-wide association studies (GWAS) were conducted using a mixed linear model (MLM). Seventeen SNPs were identified to be associated with seed hardness in at least two environments. Among them, one locus, designated Q-15-0087770, was associated with two indexes, and 13 putative genes were confirmed based on their annotations in SoyBase. This research provides new insights into advanced marker-assisted selections for breeding soybeans for seed hardness and oil content.

引用

页码：605 / 617

页数：13

共 50 条

[21] Genome-wide association study oF transmission of Soybean mosaic virus through seed
Liu, Q.
Hobbs, H.
Domier, L.
PHYTOPATHOLOGY, 2016, 106 (12) : 82 - 82
[22] Genome-wide association study of soybean seed germination under drought stress
Zhangxiong Liu
Huihui Li
Zuowang Gou
Yanjun Zhang
Xingrong Wang
Honglei Ren
Zixiang Wen
Beom-Kyu Kang
Yinghui Li
Lili Yu
Huawei Gao
Dechun Wang
Xusheng Qi
Lijuan Qiu
Molecular Genetics and Genomics, 2020, 295 : 661 - 673
[23] Genome-Wide Association Mapping for Seed Weight in Soybean with Black Seed Coats and Green Cotyledons
Jo, Hyun
Lee, Ji Yun
Lee, Jeong-Dong
AGRONOMY-BASEL, 2022, 12 (02):
[24] The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association Studies
Munoz-Amatriain, Maria
Cuesta-Marcos, Alfonso
Endelman, Jeffrey B.
Comadran, Jordi
Bonman, John M.
Bockelman, Harold E.
Chao, Shiaoman
Russell, Joanne
Waugh, Robbie
Hayes, Patrick M.
Muehlbauer, Gary J.
PLOS ONE, 2014, 9 (04):
[25] Genome-wide association studies
Nature Reviews Methods Primers, 1
[26] A Genome-Wide Association Study of Seed Morphology-Related Traits in Sorghum Mini-Core and Senegalese Lines
Ahn, Ezekiel
Park, Sunchung
Hu, Zhenbin
Ellur, Vishnutej
Cha, Minhyeok
Lee, Yoonjung
Prom, Louis K.
Magill, Clint
CROPS, 2024, 4 (02): : 156 - 171
[27] Genome-wide association studies
Willson, Joseph
NATURE REVIEWS METHODS PRIMERS, 2021, 1 (01):
[28] Genome-Wide Association Studies
Guo, Xiuqing
Rotter, Jerome I.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2019, 322 (17): : 1705 - 1706
[29] A genome-wide analysis of the USDA Soybean Isoline Collection
Gilbert, Erin
Merry, Ryan
Campbell, Benjamin W.
Stupar, Robert M.
Lorenz, Aaron J.
PLANT GENOME, 2023, 16 (02):
[30] Genome-wide association study for soybean cyst nematode resistance in Chinese elite soybean cultivars
Jun Zhang
Zixiang Wen
Wei Li
Yanwei Zhang
Lifeng Zhang
Haiying Dai
Dechun Wang
Ran Xu
Molecular Breeding, 2017, 37

← 1 2 3 4 5 →