Understanding dynamic disorder fluctuations in single-molecule enzymatic reactions

被引:9
|
作者
Dan, Nily [1 ]
机构
[1] Drexel Univ, Dept Biol & Chem Engn, Philadelphia, PA 19104 USA
关键词
enzyme; fluctuation; Markov; stochastic;
D O I
10.1016/j.cocis.2007.08.005
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Single-molecule studies of enzymatic reactions reveal fluctuations in the reaction rate, which cannot be explained by classic Markovian dynamics. This dynamic disorder is attributed to slow transitions in enzyme conformations that take place over timescales longer than reaction cycle times. In this review we summarize current theoretical models for reaction kinetics in fluctuating, single enzyme systems. Also examined are some of the implications of single-molecule fluctuations for reaction rates in systems such as cells or biosensors that contain a moderate number of molecular copies. We conclude that the dynamic disorder in single-molecule enzyme systems is well-described by available models. However, more work is required to study the effect of single-molecule fluctuations on finite systems over limited periods of time. (c) 2007 Elsevier Ltd. All rights reserved.
引用
收藏
页码:314 / 321
页数:8
相关论文
共 50 条
  • [31] Single-molecule study of oxidative enzymatic deconstruction of cellulose
    Manuel Eibinger
    Jürgen Sattelkow
    Thomas Ganner
    Harald Plank
    Bernd Nidetzky
    Nature Communications, 8
  • [32] Sizing up single-molecule enzymatic conformational dynamics
    Lu, H. Peter
    CHEMICAL SOCIETY REVIEWS, 2014, 43 (04) : 1118 - 1143
  • [33] ON THE VELOCITY OF ENZYMATIC REACTIONS IN MICHAELIS-MENTEN-LIKE SCHEMES (ENSEMBLE AND SINGLE-MOLECULE VERSIONS)
    Christophorov, L. N.
    UKRAINIAN JOURNAL OF PHYSICS, 2020, 65 (05): : 412 - 418
  • [34] Single-molecule chemical reactions on DNA origami
    Voigt, Niels V.
    Torring, Thomas
    Rotaru, Alexandru
    Jacobsen, Mikkel F.
    Ravnsbaek, Jens B.
    Subramani, Ramesh
    Mamdouh, Wael
    Kjems, Jorgen
    Mokhir, Andriy
    Besenbacher, Flemming
    Gothelf, Kurt Vesterager
    NATURE NANOTECHNOLOGY, 2010, 5 (03) : 200 - 203
  • [36] Single-molecule mapping of catalytic reactions on heterostructures
    Chen, Yuqin
    Li, Zhuoyao
    Huang, Xiao
    Lu, Gang
    Huang, Wei
    NANO TODAY, 2020, 34
  • [37] Technologies for investigating single-molecule chemical reactions
    Gao, Chunyan
    Gao, Qinghua
    Zhao, Cong
    Huo, Yani
    Zhang, Zhizhuo
    Yang, Jinlong
    Jia, Chuancheng
    Guo, Xuefeng
    NATIONAL SCIENCE REVIEW, 2024, 11 (08)
  • [38] Single-molecule chemical reactions on DNA origami
    Niels V. Voigt
    Thomas Tørring
    Alexandru Rotaru
    Mikkel F. Jacobsen
    Jens B. Ravnsbæk
    Ramesh Subramani
    Wael Mamdouh
    Jørgen Kjems
    Andriy Mokhir
    Flemming Besenbacher
    Kurt Vesterager Gothelf
    Nature Nanotechnology, 2010, 5 (3) : 200 - 203
  • [39] Technologies for investigating single-molecule chemical reactions
    Chunyan Gao
    Qinghua Gao
    Cong Zhao
    Yani Huo
    Zhizhuo Zhang
    Jinlong Yang
    Chuancheng Jia
    Xuefeng Guo
    National Science Review, 2024, 11 (08) : 322 - 352
  • [40] Surface Hydrogenation Reactions at the Single-Molecule Level
    Katano, Satoshi
    Kim, Yousoo
    Kawai, Maki
    Trenary, Michael
    CHEMICAL RECORD, 2014, 14 (05): : 819 - 826