Empirical Hydrogen-Bond Potential FunctionsuAn Old Hat Reconditioned

被引:29
|
作者
Korth, Martin [1 ,2 ]
机构
[1] Univ Ulm, Inst Theoret Chem, D-89069 Ulm, Germany
[2] Max Planck Inst Kohlenforsch, D-45470 Mulheim, Germany
关键词
computational chemistry; force-field calculations; hydrogen bonds; molecular mechanics; semiempirical calculations; MOLECULAR-MECHANICS CALCULATIONS; FORCE-FIELD; SEMIEMPIRICAL METHODS; DISPERSION CORRECTIONS; ACCURATE DESCRIPTION; QUANTUM-MECHANICS; BINDING ENTHALPY; ENERGY FUNCTIONS; SCORING FUNCTION; TIGHT-BINDING;
D O I
10.1002/cphc.201100540
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The accurate description of hydrogen-bond interactions is of vital importance for the computational modeling of biological systems. Standard force field (FF) as well as semiempirical quantum mechanical (SQM) methods are now known to have considerable problems with the accurate description of hydrogen bonds. It was found that the performance of SQM methods can be greatly improved with empirical hydrogen-bond correction terms. In the first part of this work we review the improvements developed during the recent revival of dedicated hydrogen-bond terms, also in the light of earlier FF-related work. The second part presents new findings connected to open questions in this field, namely, a study on the importance of angular and torsional information, a scheme how to avoid atom-type-defined target angles and a reduced version of our DH+ model for the application to force-field methods and physically motivated proteinligand scoring functions. Our results highlight the importance of using a complete geometric description (including angular and torsional coordinates) for the accurate treatment of hydrogen bonding. The reduced DH+ modelapplied to a modified version of the UFF force fieldshows a much improved accuracy for non-covalent interactions also with FF methods, with gains in accuracy by more than one order of magnitude.
引用
收藏
页码:3131 / 3142
页数:12
相关论文
共 50 条
  • [31] THE HYDROGEN-BOND AND OTHER REMINISCENCES
    HUGGINS, ML
    CHEMTECH, 1980, 10 (07) : 422 - 429
  • [32] WHO DISCOVERED THE HYDROGEN-BOND
    ARDON, M
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1989, 198 : 18 - HIST
  • [33] HYDROGEN-BOND DYNAMICS IN SOLUTION
    BOURNAY, J
    ROBERTSON, GN
    NATURE, 1978, 275 (5675) : 46 - 48
  • [34] CONFORMATIONAL INFLUENCE ON HYDROGEN-BOND
    PLASS, M
    KOLBE, A
    JOURNAL OF MOLECULAR STRUCTURE, 1992, 267 : 21 - 32
  • [35] THEORY OF HYDROGEN-BOND DIRECTIONALITY
    KOLLMAN, PA
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1972, 94 (06) : 1837 - &
  • [36] The hydrogen-bond system in pumpellyite
    Nagashima, Mariko
    Armbruster, Thomas
    Libowitzky, Eugen
    EUROPEAN JOURNAL OF MINERALOGY, 2010, 22 (03) : 333 - 342
  • [37] The Hydrogen-bond Basicity of Carbenes
    Abraham, Michael H.
    Elguero, Jose
    Alkorta, Ibon
    CROATICA CHEMICA ACTA, 2018, 91 (01) : 121 - 124
  • [38] INTERMOLECULAR HYDROGEN-BOND VIBRATIONS
    NOVAK, A
    CROATICA CHEMICA ACTA, 1982, 55 (1-2) : 147 - 169
  • [39] HYDROGEN-BOND BASICITY OF NITROCOMPOUNDS
    LAURENCE, C
    BERTHELOT, M
    LUCON, M
    MORRIS, DG
    JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1994, (03): : 491 - 493
  • [40] HYDROGEN-BOND PATTERNS.
    Davis, Raymond E.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 1996, 52 : C264 - C264