Investigation of reactive and spectroscopic properties of oxobutanoic acid derivative: Combined spectroscopic, DFT, MD and docking study

被引:2
|
作者
Mary, Y. Sheena [1 ]
Mary, Y. Shyrna [1 ]
Panicker, C. Yohannan [1 ]
Armakovic, Stevan [2 ]
Armakovic, Sanja J. [3 ]
Narayana, B. [4 ]
Sarojini, B. K. [5 ]
Van Alsenoy, C. [6 ]
机构
[1] Fatima Mata Natl Coll, Dept Phys, Kollam, Kerala, India
[2] Univ Novi Sad, Fac Sci, Dept Phys, Trg D Obradovica 4, Novi Sad 21000, Serbia
[3] Univ Novi Sad, Fac Sci, Dept Chem Biochem & Environm Protect, Trg D Obradovica 4, Novi Sad 21000, Serbia
[4] Mangalore Univ, Dept Chem, Mangalagangothri 574199, Karnataka, India
[5] Mangalore Univ, Dept Ind Chem, Mangalagangothri 574199, Karnataka, India
[6] Univ Antwerp, Dept Chem, Groenenborgerlaan 171, B-2020 Antwerp, Belgium
关键词
DFT; Oxobutanoic; ALIE; BDE; RDF; Molecular docking; MOLECULAR-DYNAMICS SIMULATIONS; LOCAL IONIZATION ENERGIES; CARBON-CENTERED RADICALS; FT-IR; PHOTOCATALYTIC DEGRADATION; OPTOELECTRONIC PROPERTIES; MECHANISM; STABILITY; RAMAN; AUTOXIDATION;
D O I
10.1016/j.molstruc.2017.07.052
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The optimized geometry and wavenumbers of 4-[(4-acetylphenyl)amino]-2-methylidene-4-oxobutanoic acid (APAMOB) have been calculated by density functional theory (DFT) using Becke's three-parameters hybrid functional (B3LYP) with 6-311++G(d) (5D, 7F) basis set. The theoretically predicted vibrational wavenumbers were compared with the observed FT-IR and FT-Raman spectra. The NH stretching wavenumber is red shifted in the IR spectrum from the computed wavenumber, which indicates the weakening of the NH bond. The ring breathing mode of the para substituted phenyl ring is assigned at 836 cm(-1) experimentally and at 835 cm(-1) theoretically. Molecular electrostatic potential map has also been plotted for predicting the reactive sites in the molecule. Using natural bond orbitals analysis hyperconjugative interactions and second order stabilization energies are calculated. Nonlinear optical properties of the molecule are predicted. In order to determine molecule sites that could be sensitive towards electrophilic attacks we have calculated ALIE values and mapped them to electron density surface. In the same way we have also visualized Fukui functions, which helped us to further gain an insight into the local reactivity properties of title molecule. Bond dissociation energies (BDE) have been calculated in order to determine if autoxidation mechanism is possible, while the potential influence of hydrolysis was investigated to calculations of radial distribution functions (RDF) obtained after molecular dynamics (MD) simulations. Molecular docking study suggests that the title compound shows the inhibitory activity against 2-deoxy-d-gluconate 3-dehydrogenase. (C) 2017 Elsevier B.V. All rights reserved.
引用
收藏
页码:266 / 275
页数:10
相关论文
共 50 条
  • [21] Synthesis, spectroscopic characterization, DFT computations, nonlinear optical profile and molecular docking study of a novel chalcone derivative
    Kaya, Serdal
    Gokce, Halil
    Arslan, Tayfun
    Alpaslan, Gokhan
    JOURNAL OF MOLECULAR STRUCTURE, 2020, 1202
  • [22] Investigation of the electronic properties of solvents (water, benzene, methanol) using IEFPCM model, spectroscopic investigation with docking and MD simulations of a thiadiazole derivative with anti-tumor activities
    Al-Wahaibi, Lamya H.
    Mary, Y. Sheena
    Mary, Y. Shyma
    Al-Mutairi, Aamal A.
    Hassan, Hanan M.
    El-Emam, Ali A.
    Yadav, Rohitash
    JOURNAL OF MOLECULAR LIQUIDS, 2022, 348
  • [23] Spectroscopic analysis of 8-hydroxyquinoline-5-sulphonic acid and investigation of its reactive properties by DFT and molecular dynamics simulations
    Sureshkumar, B.
    Mary, Y. Sheena
    Panicker, C. Yohannan
    Resmi, K. S.
    Suma, S.
    Armakovic, Stevan
    Armakovic, Sanja J.
    Van Alsenoy, C.
    JOURNAL OF MOLECULAR STRUCTURE, 2017, 1150 : 540 - 552
  • [24] Structural, spectroscopic and docking properties of resorcinol, its -OD isotopomer and dianion derivative: a comparative study
    Onawole, Abdulmujeeb T.
    Halim, Mahmoud Abdul
    Ullah, Nisar
    Al-Saadi, Abdulaziz A.
    STRUCTURAL CHEMISTRY, 2018, 29 (02) : 403 - 414
  • [25] Structural, spectroscopic and docking properties of resorcinol, its -OD isotopomer and dianion derivative: a comparative study
    Abdulmujeeb T. Onawole
    Mahmoud Abdul Halim
    Nisar Ullah
    Abdulaziz A. Al-Saadi
    Structural Chemistry, 2018, 29 : 403 - 414
  • [26] Effect of solvent on the photophysical properties of isoxazole derivative of curcumin: A combined spectroscopic and theoretical study
    Sharma, Manisha
    Pal, Uttam
    Kumari, Mamta
    Bagchi, Damayanti
    Rani, Swati
    Mukherjee, Dipanjan
    Bera, Arpan
    Pal, Samir Kumar
    Dasgupta, Tanusree Saha
    Mozumdar, Subho
    JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY, 2021, 410
  • [27] Spectroscopic Raman characterization of rutherfordine: a combined DFT and experimental study
    Bonales, L. J.
    Colmenero, F.
    Cobos, J.
    Timon, V.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (24) : 16575 - 16584
  • [28] Investigation of coordination properties of isolated adenine to copper metal: A systematic spectroscopic and DFT study
    Prakash, Om
    Singh, Sachin Kumar
    Singh, Bachcha
    Singh, Ranjan K.
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2013, 112 : 410 - 416
  • [29] A spectroscopic probe for combined acid and redox properties in acid catalysts
    Merat, L. M. O. C.
    San Gil, R. A. S.
    Guerra, S. R.
    Dieguez, L. C.
    Caldarelli, S.
    Eon, J. G.
    Ziarelli, F.
    Pizzala, Helene
    JOURNAL OF MOLECULAR CATALYSIS A-CHEMICAL, 2007, 272 (1-2) : 298 - 305
  • [30] Synthesis, Spectroscopic, Crystal Structure, DFT, Hirshfeld Surface and Molecular Docking Analysis of Hexahydroquinoline Derivative (HQ)
    Fatima, Aysha
    Khanum, Ghazala
    Agrawal, Dau D.
    Srivastava, Sanjay K.
    Butcher, Ray J.
    Muthu, S.
    Ahmad, Musheer
    Althubeiti, Khaled
    Siddiqui, Nazia
    Javed, Saleem
    POLYCYCLIC AROMATIC COMPOUNDS, 2023, 43 (05) : 4242 - 4270