Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments

被引:186
|
作者
Shimizu, S [1 ]
机构
[1] Univ York, Dept Chem, York Struct Biol Lab, York YO10 5YW, N Yorkshire, England
关键词
water; partial molar volume; preferential interaction; hemoglobin; cytochrome P450;
D O I
10.1073/pnas.0305836101
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
How do we estimate, from thermodynamic measurements, the number of water molecules adsorbed or released from biomolecules as a result of a biochemical process such as binding and allosteric effects? Volumetric and osmotic stress analyses are established methods for estimating water numbers; however, these techniques often yield conflicting results. In contrast, Kirkwood-Buff theory offers a novel way to calculate excess hydration number from volumetric data, provides a quantitative condition to gauge the accuracy of osmotic stress analysis, and clarifies the relationship between osmotic and volumetric analyses. I have applied Kirkwood-Buff theory to calculate water numbers for two processes: (i) the allosteric transition of hemoglobin and (h) the binding of camphor to cytochrome P450. I show that osmotic stress analysis may overestimate hydration number changes for these processes.
引用
收藏
页码:1195 / 1199
页数:5
相关论文
共 31 条
  • [21] Crustal reworking and hydration: insights from element zoning and oxygen isotopes of garnet in high-pressure rocks (Sesia Zone, Western Alps)
    Vho Alice
    Rubatto Daniela
    Lanari Pierre
    Giuntoli Francesco
    Regis Daniele
    Hermann Jörg
    Contributions to Mineralogy and Petrology, 2020, 175
  • [22] Crustal reworking and hydration: insights from element zoning and oxygen isotopes of garnet in high-pressure rocks (Sesia Zone, Western Alps)
    Alice, Vho
    Daniela, Rubatto
    Pierre, Lanari
    Francesco, Giuntoli
    Daniele, Regis
    Jorg, Hermann
    CONTRIBUTIONS TO MINERALOGY AND PETROLOGY, 2020, 175 (11)
  • [23] THE EFFECTS OF ANTICIPATORY STRESS ON REGULATION OF SYMPATHETIC TONE IN HIGH AND LOW TRAIT ANXIOUS INDIVIDUALS: CHANGES IN SYSTOLIC BLOOD PRESSURE UPON EXPOSURE TO AFFECTIVE STRESS
    Holland, Kate
    Rosa, Alana
    Blanco, Cristina
    Doster, Michael
    Harrison, David
    PSYCHOPHYSIOLOGY, 2016, 53 : S84 - S84
  • [24] Partial molar volume, surface area, and hydration changes for equilibrium unfolding and formation of aggregation transition state:: High-pressure and cosolute studies on recombinant human IFN-γ
    Webb, JN
    Webb, SD
    Cleland, JL
    Carpenter, JF
    Randolph, TW
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (13) : 7259 - 7264
  • [25] Effects of osmotic and high pressure stress on expression of virulence factors among Enterococcus spp. isolated from food of animal origin
    Zarzecka, Urszula
    Zadernowska, Anna
    Chajecka-Wierzchowska, Wioleta
    FOOD MICROBIOLOGY, 2022, 102
  • [26] Allosteric mechanisms in cytochrome P450 3A4 studied by high-pressure spectroscopy: Pivotal role of substrate-induced changes in the accessibility and degree of hydration of the heme pocket
    Davydov, Dmitri R.
    Baas, Bradley J.
    Sligar, Stephen G.
    Halpert, James R.
    BIOCHEMISTRY, 2007, 46 (26) : 7852 - 7864
  • [27] Mechanistic information on ligand-substitution reactions of europium(III) in aqueous solution from high-pressure stopped-flow experiments
    Shi, YL
    Ji, Q
    Eyring, EM
    vanEldik, R
    JOURNAL OF THE CHEMICAL SOCIETY-DALTON TRANSACTIONS, 1996, (10): : 2127 - 2134
  • [28] High pressure processing, acidic and osmotic stress increased resistance to aminoglycosides and tetracyclines and the frequency of gene transfer among strains from commercial starter and protective cultures
    Zarzecka, Urszula
    Chajecka-Wierzchowska, Wioleta
    Zakrzewski, Arkadiusz
    Zadernowska, Anna
    Fraqueza, Maria Joao
    FOOD MICROBIOLOGY, 2022, 107
  • [29] MECHANISTIC INFORMATION ON LIGAND-SUBSTITUTION REACTIONS OF GADOLINIUM(III) IN AQUEOUS-SOLUTION FROM HIGH-PRESSURE STOPPED-FLOW EXPERIMENTS
    REDDY, KB
    CAO, SB
    ORR, EC
    FABIAN, I
    VANELDIK, R
    EYRING, EM
    JOURNAL OF THE CHEMICAL SOCIETY-DALTON TRANSACTIONS, 1994, (17): : 2497 - 2501
  • [30] Stress relaxation behaviour and structural changes of muscle tissues from Gilthead Sea Bream (Sparus aurata L.) following high pressure treatment
    Campus, Marco
    Addis, Maria Filippa
    Cappuccinelli, Roberto
    Porcu, Maria Cristina
    Pretti, Luca
    Tedde, Vittorio
    Secchi, Nicola
    Stara, Giuseppe
    Roggio, Tonina
    JOURNAL OF FOOD ENGINEERING, 2010, 96 (02) : 192 - 198