Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments

被引:186
|
作者
Shimizu, S [1 ]
机构
[1] Univ York, Dept Chem, York Struct Biol Lab, York YO10 5YW, N Yorkshire, England
关键词
water; partial molar volume; preferential interaction; hemoglobin; cytochrome P450;
D O I
10.1073/pnas.0305836101
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
How do we estimate, from thermodynamic measurements, the number of water molecules adsorbed or released from biomolecules as a result of a biochemical process such as binding and allosteric effects? Volumetric and osmotic stress analyses are established methods for estimating water numbers; however, these techniques often yield conflicting results. In contrast, Kirkwood-Buff theory offers a novel way to calculate excess hydration number from volumetric data, provides a quantitative condition to gauge the accuracy of osmotic stress analysis, and clarifies the relationship between osmotic and volumetric analyses. I have applied Kirkwood-Buff theory to calculate water numbers for two processes: (i) the allosteric transition of hemoglobin and (h) the binding of camphor to cytochrome P450. I show that osmotic stress analysis may overestimate hydration number changes for these processes.
引用
收藏
页码:1195 / 1199
页数:5
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