Dissipative-particle-dynamics model of biofilm growth

被引:22
|
作者
Xu, Zhijie [1 ]
Meakin, Paul [2 ,3 ,4 ]
Tartakovsky, Alexandre [1 ]
Scheibe, Timothy D. [5 ]
机构
[1] Pacific NW Natl Lab, Fundamental & Computat Sci Directorate, Computat Math Grp, Richland, WA 99352 USA
[2] Univ Oslo, NO-0316 Oslo, Norway
[3] Idaho Natl Lab, Ctr Adv Modeling & Simulat, Idaho Falls, ID 83415 USA
[4] Inst Energy Technol, Multiphase Flow Assurance Innovat Ctr, NO-2027 Kjeller, Norway
[5] Pacific NW Natl Lab, Energy & Environm Directorate, Hydrol Tech Grp, Richland, WA 99352 USA
来源
PHYSICAL REVIEW E | 2011年 / 83卷 / 06期
关键词
ENERGY-CONSERVATION; REACTIVE TRANSPORT; BIOMASS GROWTH; PHASE-BEHAVIOR; SIMULATION; BILAYERS; SCALE; MECHANICS; FRACTURE; STRESS;
D O I
10.1103/PhysRevE.83.066702
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
A dissipative-particle-dynamics model for the quantitative simulation of biofilm growth controlled by substrate (nutrient) consumption, advective and diffusive substrate transport, and hydrodynamic interactions with fluid flow (including fragmentation and reattachment) is described. The model was used to simulate biomass growth, decay, and spreading. It predicts how the biofilm morphology depends on flow conditions, biofilm growth kinetics, the rheomechanical properties of the biofilm, and adhesion to solid surfaces. The morphology of the model biofilm depends strongly on its rigidity and the magnitude of the body force that drives the fluid over the biofilm.
引用
收藏
页数:9
相关论文
共 50 条
  • [41] A simple analytical model of complex wall in multibody dissipative particle dynamics
    Mishra, A.
    Hemeda, A.
    Torabi, M.
    Palko, J.
    Goyal, S.
    Li, D.
    Ma, Y.
    JOURNAL OF COMPUTATIONAL PHYSICS, 2019, 396 : 416 - 426
  • [42] Phase Behavior of Alkyl Ethoxylate Surfactants in a Dissipative Particle Dynamics Model
    Anderson, Richard L.
    Taddese, Tseden
    Lavagnini, Ennio
    Warren, Patrick B.
    Bray, David J.
    Gunn, David S. D.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2023, 127 (07): : 1674 - 1687
  • [43] An alternative approach to dissipative particle dynamics
    Lowe, CP
    EUROPHYSICS LETTERS, 1999, 47 (02): : 145 - 151
  • [44] Hydrodynamic relaxations in dissipative particle dynamics
    Hansen, J. S.
    Greenfield, Michael L.
    Dyre, Jeppe C.
    JOURNAL OF CHEMICAL PHYSICS, 2018, 148 (03):
  • [45] Collective effects in dissipative particle dynamics
    Serrano, M.
    Español, P.
    Zúñiga, Ignacio
    Computer Physics Communications, 1999, 121 : 306 - 308
  • [46] Dissipative particle dynamics with energy conservation
    Avalos, JB
    Mackie, AD
    EUROPHYSICS LETTERS, 1997, 40 (02): : 141 - 146
  • [47] Hydrodynamic interactions in dissipative particle dynamics
    Li, Zhigang
    Drazer, German
    PHYSICS OF FLUIDS, 2008, 20 (10)
  • [48] HYDRODYNAMICS FROM DISSIPATIVE PARTICLE DYNAMICS
    ESPANOL, P
    PHYSICAL REVIEW E, 1995, 52 (02): : 1734 - 1742
  • [49] A new algorithm for dissipative particle dynamics
    den Otter, WK
    Clarke, JHR
    EUROPHYSICS LETTERS, 2001, 53 (04): : 426 - 431
  • [50] QUANTUM DYNAMICS OF A DISSIPATIVE FREE PARTICLE
    ASLANGUL, C
    POTTIER, N
    SAINTJAMES, D
    PHYSICS LETTERS A, 1987, 123 (08) : 413 - 416