In Vitro Selection of Diversely Functionalized Aptamers

被引:64
|
作者
Kong, Dehui [1 ]
Yeung, Wayland [1 ]
Hili, Ryan [1 ,2 ]
机构
[1] Univ Georgia, Dept Chem, 140 Cedar St, Athens, GA 30602 USA
[2] York Univ, Dept Chem, 4700 Keele St, Toronto, ON M3J 1P3, Canada
基金
美国国家卫生研究院;
关键词
NUCLEIC-ACID POLYMERS; MODIFIED DNA; ENZYMATIC-SYNTHESIS; HUMAN THROMBIN; LIGANDS; BIND; ENRICHMENT; MOLECULES; FIDELITY; CHAIN;
D O I
10.1021/jacs.7b07241
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We describe the application of T4 DNA ligase-catalyzed DNA templated oligonucleotide polymerization toward the evolution of a diversely functionalized nucleic acid aptamer for human a-thrombin. Using a 256-membered ANNNN comonomer library comprising 16 sublibraries modified with different functional groups, a highly functionalized aptamer for thrombin was raised with a dissociation constant of 1.6 nM. The aptamer was found to be selective for thrombin and required the modifications for binding affinity. This study demonstrates the most differentially functionalized nucleic acid aptamer discovered by in vitro selection and should enable the future exploration of functional group dependence during the evolution of nucleic acid polymer activity.
引用
收藏
页码:13977 / 13980
页数:4
相关论文
共 50 条
  • [31] In vitro selection of DNA aptamers against human osteosarcoma
    Khaliunsarnai Tsogtbaatar
    Diana A. Sousa
    Debora Ferreira
    Atakan Tevlek
    Halil Murat Aydın
    Eda Çelik
    Ligia Rodrigues
    Investigational New Drugs, 2022, 40 : 172 - 181
  • [32] In vitro selection of aptamers that act with Zn2+
    Kawakami, J
    Imanaka, H
    Yokota, Y
    Sugimoto, N
    JOURNAL OF INORGANIC BIOCHEMISTRY, 2000, 82 (1-4) : 197 - 206
  • [33] In vitro selection of nucleic acid aptamers that bind proteins
    Conrad, RC
    Giver, L
    Tian, Y
    Ellington, AD
    COMBINATORIAL CHEMISTRY, 1996, 267 : 336 - 367
  • [34] Towards the selection of phosphorothioate aptamers -: Optimizing in vitro selection steps with phosphorothioate nucleotides
    Andreola, ML
    Calmels, C
    Michel, J
    Toulmé, JJ
    Litvak, S
    EUROPEAN JOURNAL OF BIOCHEMISTRY, 2000, 267 (16): : 5032 - 5040
  • [35] In vitro selection of DNA aptamers which bind to cholic acid
    Kato, T
    Takemura, T
    Yano, K
    Ikebukuro, K
    Karube, I
    BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION, 2000, 1493 (1-2): : 12 - 18
  • [36] In vitro selection of RNA aptamers to autoantibodies associated with multiple sclerosis
    Tivanova, A. S.
    Vorobjeva, M. A.
    Bezuglova, A. M.
    Fokina, A. A.
    Nevinsky, G. A.
    Venyaminova, A. G.
    FEBS JOURNAL, 2011, 278 : 164 - 164
  • [37] Aptamers as functional nucleic acids:In vitro selection and biotechnological applications
    Kyung Man You
    Sang Hyun Lee
    Aesul Im
    Sun Bok Lee
    Biotechnology and Bioprocess Engineering, 2003, 8 : 64 - 75
  • [38] In vitro selection of DNA aptamers that bind L-Tyrosinamide
    Vianini, E
    Palumbo, M
    Barbara, G
    BIOORGANIC & MEDICINAL CHEMISTRY, 2001, 9 (10) : 2543 - 2548
  • [39] In vitro selection and characterization of cellulose-binding DNA aptamers
    Boese, Benjamin J.
    Breaker, Ronald R.
    NUCLEIC ACIDS RESEARCH, 2007, 35 (19) : 6378 - 6388
  • [40] Aptamers as functional nucleic acids:: In vitro selection and biotechnological applications
    You, KM
    Lee, SH
    Im, A
    Lee, SB
    BIOTECHNOLOGY AND BIOPROCESS ENGINEERING, 2003, 8 (02) : 64 - 75