PACKMAN-Molecule: Python']Python toolbox for structural bioinformatics

被引：1
|
作者：
Khade, Pranav M. [1 ]
Jernigan, Robert L. [1 ]
Gromiha, Michael
机构：
[1] Iowa State Univ, Roy J Carver Dept Biochem Biophys & Mol Biol, Bioinformat & Computat Biol Program, Ames, IA 50011 USA
来源：
BIOINFORMATICS ADVANCES | 2022年 / 2卷 / 01期
基金：
美国国家卫生研究院;
关键词：
D O I：
10.1093/bioadv/vbac007
中图分类号：
Q [生物科学];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
PACKMAN-molecule is a Structural Bioinformatics toolbox in the form of an Application Programming Interface that contains several utilities that can be used for structural bioinformatics applications. It has already been used in several applications, and its added features and unique object hierarchy make it readily extensible, feature-rich and user-friendly. The tutorial for it is available at: https://py-packman.readthedocs.io/en/latest/tutorials/molecule.htmlAvailability and implementation PACKMAN-Molecule is freely available with an MIT license on GitHub at https://github.com/Pranavkhade/PACKMAN.
引用
收藏
页数：2
相关论文
共 50 条
  • [21] bandicoot: a Python']Python Toolbox for Mobile Phone Metadata
    de Montjoye, Yves-Alexandre
    Rocher, Luc
    Pentland, Alex 'Sandy'
    JOURNAL OF MACHINE LEARNING RESEARCH, 2016, 17
  • [22] Natter: A Python']Python Natural Image Statistics Toolbox
    Sinz, Fabian H.
    Lies, Joern-Philipp
    Gerwinn, Sebastian
    Bethge, Matthias
    JOURNAL OF STATISTICAL SOFTWARE, 2014, 61 (05): : 1 - 34
  • [23] pyMechOpt: A Python']Python toolbox for optimizing of reaction mechanisms
    Di, Sihan
    Yu, Nanjia
    Han, Shutao
    He, Haodong
    SOFTWAREX, 2025, 29
  • [24] Structural flexibility of the intestine of python']python (Python']Python molurus).
    Starck, JM
    Beese, K
    AMERICAN ZOOLOGIST, 1999, 39 (05): : 86A - 86A
  • [25] Commissioning simulations tools based on python']python Accelerator Toolbox
    Liuzzo, S. M.
    Carmignani, N.
    Carver, L. R.
    Hoummi, L.
    Perron, T.
    White, S.
    Agapov, I.
    Boese, M.
    Hellert, T.
    Keil, J.
    Malina, L.
    Musa, E.
    Veglia, B.
    IPAC23 PROCEEDINGS, 2024, 2687
  • [26] pyPPG: a Python']Python toolbox for comprehensive photoplethysmography signal analysis
    Goda, Marton A.
    Charlton, Peter H.
    Behar, Joachim A.
    PHYSIOLOGICAL MEASUREMENT, 2024, 45 (04)
  • [27] Shennong: A Python']Python toolbox for audio speech features extraction
    Bernard, Mathieu
    Poli, Maxime
    Karadayi, Julien
    Dupoux, Emmanuel
    BEHAVIOR RESEARCH METHODS, 2023, 55 (08) : 4489 - 4501
  • [28] The Lompe code: A Python']Python toolbox for ionospheric data analysis
    Hovland, A. O.
    Laundal, K. M.
    Reistad, J. P.
    Hatch, S. M.
    Walker, S. J.
    Madelaire, M.
    Ohma, A.
    FRONTIERS IN ASTRONOMY AND SPACE SCIENCES, 2022, 9
  • [29] ZonalMetrics - a Python']Python toolbox for zonal landscape structure analysis
    Adamczyk, Joanna
    Tiede, Dirk
    COMPUTERS & GEOSCIENCES, 2017, 99 : 91 - 99
  • [30] Diddy: A Python']Python Toolbox for Infinite Discrete Dynamical Systems
    Salo, Ville
    Torma, Ilkka
    CELLULAR AUTOMATA AND DISCRETE COMPLEX SYSTEMS, AUTOMATA 2023, 2023, 14152 : 33 - 47
12345