Capsule Extensive surveys highlighted the importance of weedy fodder brassicas, stubbles and open farmland landscapes to declining birds. Aims To determine habitat associations of seed-eating passerines on Scottish farmland in winter, and recommend appropriate conservation measures. Methods Transect surveys were carried out on farmland in 100 1-km squares, containing 2885 fields, across Scotland. Birds, crops, field boundary features and weeds were recorded on three visits. Bird-habitat associations were examined using logistic regression models. Results Seed-eating passerines were highly concentrated: 100 fields (1.4% of the area surveyed) held half the total count. The highest field densities of birds were recorded in fodder brassica crops and stubbles, averaging 12 and 3.3 birds/ha respectively. In fodder crops, weedier fields held many more birds. Multiple regression analysis emphasized the importance of fodder crops, stubbles and farmyards and suggested that declining bird species preferred more open landscapes. Several bird species were associated with fields containing very weedy patches, and/or weeds of the family Chenopodiaceae. These features were commonest in fodder brassicas. Many of the crop types found to be important as bird habitats in winter have declined in area in Scotland; the, availability of seed food in such habitats may also have diminished. Such changes may partly explain recent population declines. Conclusions Agri-environment measures for seed-eating passerines should support the widespread provision of small areas of seed-rich wintering habitats, such as weedy fodder brassicas and stubbles, especially in open (0-10% woodland and scrub) landscapes in areas with mild winters.